Clone BO28992 Report

Search the DGRC for BO28992

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:289
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptArp53D-RA
Protein status:BO28992.pep: Imported from assembly
Sequenced Size:1162

Clone Sequence Records

BO28992.complete Sequence

1162 bp assembled on 2011-08-24

GenBank Submission: KX795285

> BO28992.complete
GAAGTTATCAGTCGACATGAGCAGCGAGGTAGATAGTAATTCACACCACG
CCGCAGTGGTTATTGACAACGGCTCTGGAGTATGTAAGGCTGGATTCTCC
CCAGAAGATACTCCCCGTGCTGTCTTCCCGTCGATTGTGGGCAGACCTCG
TCACCTGAACGTCCTGCTGGATTCCGTGATCGGTGATAGTGTTATTGGCG
AGGCGGCAGCCCGAAAAAGGGGAATACTAACCCTAAAGTATCCCATCGAG
CACGGAATGGTCAAGAACTGGGATGAAATGGAGATGGTTTGGCAGCACAC
GTACGAGCTCTTGCGGGCGGATCCAATGGATTTGCCGGCTCTACTCACCG
AAGCCCCACTGAATCCGAAGAAGAATAGAGAGAAGATGACAGAGATTATG
TTCGAACACTTTCAGGTGCCAGCTTTTTATGTAGCAGTTCAGGCTGTGCT
CTCACTTTACGCCACCGGGCGTACTGTGGGCATTGTGGTGGACTCGGGTG
ATGGTGTGACGCACACGGTACCGATCTACGAAGGATTTGCCCTGCCCCAC
GCCTGTGTACGAGTTGATCTGGCCGGCAGGGACCTCACCGATTATCTATG
CAAGCTGCTTCTGGAGAGGGGCGTTACAATGGGCACCTCTGCTGAACGGG
AAATCGTGCGTGAAATCAAGGAGAAACTCTGCTATGTGTCAATGAACTAT
GCCAAGGAAATGGATCTCCACGGAAAGGTGGAAACCTATGAGCTGCCAGA
TGGGCAGAAAATCGTTTTGGGCTGCGAGAGATTCCGCTGCCCGGAGGCTC
TCTTCCAACCCAGTTTGCTGGGTCAGGAGGTGATGGGCATCCACGAGGCC
ACCCATCACTCGATAACCAACTGCGACATGGATCTGCGAAAGGATATGTA
TGCGAACATTGTTCTCTCTGGCGGTACGACCATGTTTCGTAACATCGAGC
ATAGATTCCTGCAAGACCTAACCGAAATGGCTCCACCATCCATCCGAATC
AAGGTTAACGCTAGTCCAGACCGCAGATTCTCCGTTTGGACGGGTGGTTC
CGTCTTGGCCTCACTCACGAGCTTCCAAAACATGTGGATCGACAGCTTGG
AGTACGAAGAAGTTGGTTCCGCCATAGTCCATAGAAAGTGTTTTGCAAGC
TTTCTAGACCAT

BO28992.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:28:07
Subject Length Description Subject Range Query Range Score Percent Strand
Arp53D-RB 1236 CG5409-PB 104..1233 15..1144 5635 99.9 Plus
Act88F-RA 1131 CG5178-PA 319..566 347..594 265 73.8 Plus
Act87E-RC 1131 CG18290-PC 319..525 347..553 255 74.9 Plus
Act88F-RA 1131 CG5178-PA 759..919 775..935 205 75.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
Arp53D-RB 1378 CG5409-RB 120..1249 15..1144 5635 99.9 Plus
Act88F-RA 1595 CG5178-RA 413..660 347..594 265 73.8 Plus
Act87E-RC 1853 CG18290-RC 400..606 347..553 255 74.9 Plus
Act88F-RA 1595 CG5178-RA 853..1013 775..935 205 75.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:28:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16774418..16775547 15..1144 5635 99.9 Plus
3R 32079331 3R 15440934..15441181 347..594 265 73.8 Plus
3R 32079331 3R 13426922..13427128 347..553 255 74.9 Plus
X 23542271 X 5903016..5903222 347..553 210 73.4 Plus
3R 32079331 3R 15441374..15441534 775..935 205 75.2 Plus
X 23542271 X 5902723..5902821 57..155 195 79.8 Plus
3L 28110227 3L 21985762..21985875 440..553 195 78.1 Plus
Blast to na_te.dros performed on 2014-11-26 16:28:06 has no hits.

BO28992.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:35:27 Download gff for BO28992.complete
Subject Subject Range Query Range Percent Splice Strand
Arp53D-RA 62..1189 17..1146 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:01:40 Download gff for BO28992.complete
Subject Subject Range Query Range Percent Splice Strand
Arp53D-RB 122..1249 17..1146 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:50 Download gff for BO28992.complete
Subject Subject Range Query Range Percent Splice Strand
Arp53D-RB 122..1249 17..1146 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:50 Download gff for BO28992.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16774420..16775547 17..1146 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:01:40 Download gff for BO28992.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12661925..12663052 17..1146 99   Plus

BO28992.pep Sequence

Translation from 16 to 1162

> BO28992.pep
MSSEVDSNSHHAAVVIDNGSGVCKAGFSPEDTPRAVFPSIVGRPRHLNVL
LDSVIGDSVIGEAAARKRGILTLKYPIEHGMVKNWDEMEMVWQHTYELLR
ADPMDLPALLTEAPLNPKKNREKMTEIMFEHFQVPAFYVAVQAVLSLYAT
GRTVGIVVDSGDGVTHTVPIYEGFALPHACVRVDLAGRDLTDYLCKLLLE
RGVTMGTSAEREIVREIKEKLCYVSMNYAKEMDLHGKVETYELPDGQKIV
LGCERFRCPEALFQPSLLGQEVMGIHEATHHSITNCDMDLRKDMYANIVL
SGGTTMFRNIEHRFLQDLTEMAPPSIRIKVNASPDRRFSVWTGGSVLASL
TSFQNMWIDSLEYEEVGSAIVHRKCFASFLDH

BO28992.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
Arp53D-PB 411 CG5409-PB 36..411 1..376 1970 100 Plus
Act5C-PE 376 CG4027-PE 7..376 12..376 1281 64.9 Plus
Act5C-PD 376 CG4027-PD 7..376 12..376 1281 64.9 Plus
Act5C-PC 376 CG4027-PC 7..376 12..376 1281 64.9 Plus
Act5C-PA 376 CG4027-PA 7..376 12..376 1281 64.9 Plus