BO28992.complete Sequence
1162 bp assembled on 2011-08-24
GenBank Submission: KX795285
> BO28992.complete
GAAGTTATCAGTCGACATGAGCAGCGAGGTAGATAGTAATTCACACCACG
CCGCAGTGGTTATTGACAACGGCTCTGGAGTATGTAAGGCTGGATTCTCC
CCAGAAGATACTCCCCGTGCTGTCTTCCCGTCGATTGTGGGCAGACCTCG
TCACCTGAACGTCCTGCTGGATTCCGTGATCGGTGATAGTGTTATTGGCG
AGGCGGCAGCCCGAAAAAGGGGAATACTAACCCTAAAGTATCCCATCGAG
CACGGAATGGTCAAGAACTGGGATGAAATGGAGATGGTTTGGCAGCACAC
GTACGAGCTCTTGCGGGCGGATCCAATGGATTTGCCGGCTCTACTCACCG
AAGCCCCACTGAATCCGAAGAAGAATAGAGAGAAGATGACAGAGATTATG
TTCGAACACTTTCAGGTGCCAGCTTTTTATGTAGCAGTTCAGGCTGTGCT
CTCACTTTACGCCACCGGGCGTACTGTGGGCATTGTGGTGGACTCGGGTG
ATGGTGTGACGCACACGGTACCGATCTACGAAGGATTTGCCCTGCCCCAC
GCCTGTGTACGAGTTGATCTGGCCGGCAGGGACCTCACCGATTATCTATG
CAAGCTGCTTCTGGAGAGGGGCGTTACAATGGGCACCTCTGCTGAACGGG
AAATCGTGCGTGAAATCAAGGAGAAACTCTGCTATGTGTCAATGAACTAT
GCCAAGGAAATGGATCTCCACGGAAAGGTGGAAACCTATGAGCTGCCAGA
TGGGCAGAAAATCGTTTTGGGCTGCGAGAGATTCCGCTGCCCGGAGGCTC
TCTTCCAACCCAGTTTGCTGGGTCAGGAGGTGATGGGCATCCACGAGGCC
ACCCATCACTCGATAACCAACTGCGACATGGATCTGCGAAAGGATATGTA
TGCGAACATTGTTCTCTCTGGCGGTACGACCATGTTTCGTAACATCGAGC
ATAGATTCCTGCAAGACCTAACCGAAATGGCTCCACCATCCATCCGAATC
AAGGTTAACGCTAGTCCAGACCGCAGATTCTCCGTTTGGACGGGTGGTTC
CGTCTTGGCCTCACTCACGAGCTTCCAAAACATGTGGATCGACAGCTTGG
AGTACGAAGAAGTTGGTTCCGCCATAGTCCATAGAAAGTGTTTTGCAAGC
TTTCTAGACCAT
BO28992.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:28:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp53D-RB | 1236 | CG5409-PB | 104..1233 | 15..1144 | 5635 | 99.9 | Plus |
Act88F-RA | 1131 | CG5178-PA | 319..566 | 347..594 | 265 | 73.8 | Plus |
Act87E-RC | 1131 | CG18290-PC | 319..525 | 347..553 | 255 | 74.9 | Plus |
Act88F-RA | 1131 | CG5178-PA | 759..919 | 775..935 | 205 | 75.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:28:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp53D-RB | 1378 | CG5409-RB | 120..1249 | 15..1144 | 5635 | 99.9 | Plus |
Act88F-RA | 1595 | CG5178-RA | 413..660 | 347..594 | 265 | 73.8 | Plus |
Act87E-RC | 1853 | CG18290-RC | 400..606 | 347..553 | 255 | 74.9 | Plus |
Act88F-RA | 1595 | CG5178-RA | 853..1013 | 775..935 | 205 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:28:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16774418..16775547 | 15..1144 | 5635 | 99.9 | Plus |
3R | 32079331 | 3R | 15440934..15441181 | 347..594 | 265 | 73.8 | Plus |
3R | 32079331 | 3R | 13426922..13427128 | 347..553 | 255 | 74.9 | Plus |
X | 23542271 | X | 5903016..5903222 | 347..553 | 210 | 73.4 | Plus |
3R | 32079331 | 3R | 15441374..15441534 | 775..935 | 205 | 75.2 | Plus |
X | 23542271 | X | 5902723..5902821 | 57..155 | 195 | 79.8 | Plus |
3L | 28110227 | 3L | 21985762..21985875 | 440..553 | 195 | 78.1 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:28:06 has no hits.
BO28992.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:35:27 Download gff for
BO28992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp53D-RA | 62..1189 | 17..1146 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:01:40 Download gff for
BO28992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp53D-RB | 122..1249 | 17..1146 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:50 Download gff for
BO28992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp53D-RB | 122..1249 | 17..1146 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:50 Download gff for
BO28992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16774420..16775547 | 17..1146 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:01:40 Download gff for
BO28992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12661925..12663052 | 17..1146 | 99 | | Plus |
BO28992.pep Sequence
Translation from 16 to 1162
> BO28992.pep
MSSEVDSNSHHAAVVIDNGSGVCKAGFSPEDTPRAVFPSIVGRPRHLNVL
LDSVIGDSVIGEAAARKRGILTLKYPIEHGMVKNWDEMEMVWQHTYELLR
ADPMDLPALLTEAPLNPKKNREKMTEIMFEHFQVPAFYVAVQAVLSLYAT
GRTVGIVVDSGDGVTHTVPIYEGFALPHACVRVDLAGRDLTDYLCKLLLE
RGVTMGTSAEREIVREIKEKLCYVSMNYAKEMDLHGKVETYELPDGQKIV
LGCERFRCPEALFQPSLLGQEVMGIHEATHHSITNCDMDLRKDMYANIVL
SGGTTMFRNIEHRFLQDLTEMAPPSIRIKVNASPDRRFSVWTGGSVLASL
TSFQNMWIDSLEYEEVGSAIVHRKCFASFLDH
BO28992.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:23:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp53D-PB | 411 | CG5409-PB | 36..411 | 1..376 | 1970 | 100 | Plus |
Act5C-PE | 376 | CG4027-PE | 7..376 | 12..376 | 1281 | 64.9 | Plus |
Act5C-PD | 376 | CG4027-PD | 7..376 | 12..376 | 1281 | 64.9 | Plus |
Act5C-PC | 376 | CG4027-PC | 7..376 | 12..376 | 1281 | 64.9 | Plus |
Act5C-PA | 376 | CG4027-PA | 7..376 | 12..376 | 1281 | 64.9 | Plus |