BO28993.complete Sequence
191 bp assembled on 2011-08-24
> BO28993.complete
GAAGTTATCAGTCGACATGTTGATTGCCCGACTTGGATTCTTGTTGTGCT
CATTGGGCCTTGCAACTGCCATATGTCAAACGAATGGGGAAAGTTGTAAG
TCGCATGCGGATTGCTGCTCCACGATGTGCCTGACCCAACTGGGTCAGTG
TTCACCCAAAAGGGGAGATCAGTGGGCAAGCTTTCTAGACC
BO28993.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:28:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43061-RA | 162 | CG43061-PA | 1..159 | 17..175 | 795 | 100 | Plus |
Sfp93F-RA | 162 | CG42608-PA | 1..159 | 17..175 | 765 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:28:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43061-RA | 329 | CG43061-RA | 30..188 | 17..175 | 795 | 100 | Plus |
Sfp93F-RA | 329 | CG42608-RA | 30..188 | 17..175 | 765 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:28:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8049838..8049918 | 95..175 | 405 | 100 | Plus |
3R | 32079331 | 3R | 21736050..21736130 | 175..95 | 405 | 100 | Minus |
3R | 32079331 | 3R | 8049702..8049779 | 17..94 | 390 | 100 | Plus |
3R | 32079331 | 3R | 21736190..21736267 | 94..17 | 360 | 97.4 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:28:35 has no hits.
BO28993.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:35:28 Download gff for
BO28993.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43061-RA | 35..188 | 22..175 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:01:51 Download gff for
BO28993.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43061-RA | 35..188 | 22..175 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:20:02 Download gff for
BO28993.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43061-RA | 35..188 | 22..175 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:20:02 Download gff for
BO28993.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21736050..21736130 | 95..175 | 100 | <- | Minus |
3R | 21736190..21736262 | 22..94 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:01:51 Download gff for
BO28993.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17561772..17561852 | 95..175 | 100 | <- | Minus |
arm_3R | 17561912..17561984 | 22..94 | 97 | | Minus |
BO28993.pep Sequence
Translation from 16 to 190
> BO28993.pep
MLIARLGFLLCSLGLATAICQTNGESCKSHADCCSTMCLTQLGQCSPKRG
DQWASFLD
BO28993.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:23:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43061-PA | 53 | CG43061-PA | 1..53 | 1..53 | 294 | 100 | Plus |
Sfp93F-PA | 53 | CG42608-PA | 1..53 | 1..53 | 285 | 96.2 | Plus |