BO28996.complete Sequence
598 bp assembled on 2011-08-24
GenBank Submission: KX795382
> BO28996.complete
GAAGTTATCAGTCGACATGGATTCCGGCTATTCGTCAGTCTTAATATTGT
TGGCAGTTTGGCTAATCAGTAGATGCGGAGCAGCGCGGAAATGGGAGTAC
GAACCTGTATTGATATTAACCACCTCTTCGGACGACAGTCTAATAAAATT
AGAGTCCAGTATTGTTCGCTTAGGGCGTGGAAAGTTTGGAATATCAGCGC
GGGTGGAGTGGAACTATGACACCACTGAGGAGACAATGGTGGAGGCTGTT
GTATACCGCAGCAATTCGGGTGATGAGTCCGACTACAAGCTGCTCCCTTG
GGCCATTCCTAAGCAAACCTTTTACGACTACCTCAACTCCTACTACAAGG
ATGTGATAATGAAGAACTTTGCCCCCTGTTCCAATGTGCCGCAGTTCAAG
GGCAAATTTCAACCGCCTTGGCCGAAACGAACGTATATCGGTGACAAATG
CGTCTTTGAAGCCGAAGGTTTTCCGGATATCGTGCCACCTGGATTCTACA
AGATTATTTTCAATTGTACCGGACCTGATCAGCCATCGTGGAGCTTTATC
GGAATTTTTAAAATAATAAACAAAATGTTTGCAAGCTTTCTAGACCAT
BO28996.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:26:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18537-RA | 567 | CG18537-PA | 1..564 | 17..580 | 2820 | 100 | Plus |
| CG18538-RA | 549 | CG18538-PA | 246..419 | 280..453 | 315 | 78.7 | Plus |
| CG18536-RA | 576 | CG18536-PA | 199..350 | 206..357 | 265 | 78.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:26:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18537-RA | 607 | CG18537-RA | 18..581 | 17..580 | 2820 | 100 | Plus |
| CG18538-RA | 549 | CG18538-RA | 246..419 | 280..453 | 315 | 78.7 | Plus |
| CG18536-RA | 788 | CG18536-RA | 351..502 | 206..357 | 265 | 78.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:26:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18296288..18296630 | 238..580 | 1715 | 100 | Plus |
| 2R | 25286936 | 2R | 18296072..18296229 | 85..242 | 790 | 100 | Plus |
| 2R | 25286936 | 2R | 18295945..18296013 | 17..85 | 345 | 100 | Plus |
| 2R | 25286936 | 2R | 18297448..18297621 | 280..453 | 315 | 78.7 | Plus |
| 2R | 25286936 | 2R | 18295272..18295372 | 257..357 | 205 | 80.2 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:26:27 has no hits.
BO28996.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:35:23 Download gff for
BO28996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18537-RA | 1..564 | 17..582 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:00:59 Download gff for
BO28996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18537-RA | 18..581 | 17..582 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:10 Download gff for
BO28996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18537-RA | 18..581 | 17..582 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:10 Download gff for
BO28996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18295945..18296013 | 17..85 | 100 | -> | Plus |
| 2R | 18296073..18296225 | 86..238 | 100 | -> | Plus |
| 2R | 18296289..18296630 | 239..582 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:00:59 Download gff for
BO28996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14183450..14183518 | 17..85 | 100 | -> | Plus |
| arm_2R | 14183578..14183730 | 86..238 | 100 | -> | Plus |
| arm_2R | 14183794..14184135 | 239..582 | 99 | | Plus |
BO28996.pep Sequence
Translation from 16 to 598
> BO28996.pep
MDSGYSSVLILLAVWLISRCGAARKWEYEPVLILTTSSDDSLIKLESSIV
RLGRGKFGISARVEWNYDTTEETMVEAVVYRSNSGDESDYKLLPWAIPKQ
TFYDYLNSYYKDVIMKNFAPCSNVPQFKGKFQPPWPKRTYIGDKCVFEAE
GFPDIVPPGFYKIIFNCTGPDQPSWSFIGIFKIINKMFASFLDH
BO28996.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:23:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18537-PA | 188 | CG18537-PA | 1..188 | 1..188 | 1017 | 100 | Plus |
| CG18536-PA | 191 | CG18536-PA | 9..191 | 6..188 | 631 | 60.7 | Plus |
| CG18538-PA | 182 | CG18538-PA | 17..181 | 24..187 | 525 | 58.3 | Plus |
| CG18539-PB | 185 | CG18539-PB | 6..184 | 7..187 | 512 | 51.4 | Plus |
| CG14502-PD | 188 | CG14502-PD | 13..187 | 8..187 | 491 | 46.7 | Plus |
