BO29004.complete Sequence
752 bp assembled on 2011-09-14
> BO29004.complete
GAAGTTATCAGTCGACATGGAATTCAATTACCTTGCTGATTCCGCACTTT
CCACTTTAGTGGAAAACAAAAAGTTCTTCAAGGAAATGTCAGATTTCGTG
TCCGATTTCAGCGATGGCGGGAAGATCAAGAAGTTGCTCGAGCAGAGCGT
TGAGCAGAGCGTGGAGCACGCCGTGAATGTAGTCCATATGAAGATAAAGC
ACCAATCGCTCAACAAGGCTATGAATCAGGTCAAAAACTCTAGCGCCACC
ATCGAGGAGTTCGAGGAAGTCTGGAAGGAACGCTCCAAAGCGGTGGAGCA
GAAGCGCATCAATGTCAAGAATCTACACGAGTTCAAGAACTTCGTAAAAG
CAGTTGAATCAGCAGCTGGTCAGGCGGGTGCGGAAGTCAATGATCAAGCG
AATGGCACCGCCTATGATGAGGACCTTATTATGGAAGACTCCGGCAGCGA
GGTCTTCTCGTTCTACGATCCCTGGTCCAAGGCCCTGATAAAGAACCCCA
TGCGCAACAAAATGTGCGGTCACATCTACGACCGCGACTCGGTGATGCCG
ATCATAATGGACCGCATTGGCATCCGATGCCCGGTGCTCGGCTGCGCCAA
CTTGTGCTACATCCAGCCAGATCACCTGGTCCAGGACGCCAATGTCCAGC
AAAAGATACAACAGAGCATGTCTAACGCGATCGTGGATGTAACTGCCTCG
GAGGAGGACGAGGAAGCAAGCTTTCTAGACCATTCGTGGGGGGCGGGGGG
GG
BO29004.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:22:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qjt-RB | 702 | CG13732-PB | 1..699 | 17..715 | 3495 | 100 | Plus |
qjt-RA | 702 | CG13732-PA | 1..699 | 17..715 | 3495 | 100 | Plus |
cerv-RD | 693 | CG15645-PD | 1..678 | 17..715 | 1550 | 82.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:22:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qjt-RB | 834 | CG13732-RB | 55..753 | 17..715 | 3495 | 100 | Plus |
qjt-RA | 990 | CG13732-RA | 211..909 | 17..715 | 3495 | 100 | Plus |
cerv-RD | 1141 | CG15645-RD | 283..960 | 17..715 | 1550 | 82.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:22:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17479362..17480060 | 17..715 | 3495 | 100 | Plus |
X | 23542271 | X | 15577167..15577718 | 715..155 | 1360 | 83.2 | Minus |
X | 23542271 | X | 15575060..15575354 | 709..415 | 605 | 80.3 | Minus |
X | 23542271 | X | 15555366..15555660 | 709..415 | 560 | 79.3 | Minus |
X | 23542271 | X | 15575375..15575510 | 367..232 | 275 | 80.1 | Minus |
X | 23542271 | X | 15555727..15555813 | 318..232 | 270 | 87.4 | Minus |
X | 23542271 | X | 15577813..15577889 | 93..17 | 235 | 87 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:22:54 has no hits.
BO29004.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-14 12:00:00 Download gff for
BO29004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qjt-RA | 114..815 | 17..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:13:34 Download gff for
BO29004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qjt-RA | 211..909 | 17..715 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:30 Download gff for
BO29004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qjt-RA | 211..909 | 17..715 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:30 Download gff for
BO29004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17479362..17480060 | 17..715 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:13:34 Download gff for
BO29004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17472462..17473160 | 17..715 | 100 | | Plus |
BO29004.pep Sequence
Translation from 16 to 751
> BO29004.pep
MEFNYLADSALSTLVENKKFFKEMSDFVSDFSDGGKIKKLLEQSVEQSVE
HAVNVVHMKIKHQSLNKAMNQVKNSSATIEEFEEVWKERSKAVEQKRINV
KNLHEFKNFVKAVESAAGQAGAEVNDQANGTAYDEDLIMEDSGSEVFSFY
DPWSKALIKNPMRNKMCGHIYDRDSVMPIIMDRIGIRCPVLGCANLCYIQ
PDHLVQDANVQQKIQQSMSNAIVDVTASEEDEEASFLDHSWGAGG
BO29004.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:15:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qjt-PB | 233 | CG13732-PB | 1..233 | 1..233 | 1197 | 100 | Plus |
qjt-PA | 233 | CG13732-PA | 1..233 | 1..233 | 1197 | 100 | Plus |
cerv-PD | 230 | CG15645-PD | 1..230 | 1..239 | 806 | 68.2 | Plus |
cerv-PA | 230 | CG15645-PA | 1..230 | 1..239 | 806 | 68.2 | Plus |
cerv-PC | 177 | CG15645-PC | 1..177 | 58..239 | 646 | 71.4 | Plus |