BO29011.complete Sequence
631 bp assembled on 2011-08-24
GenBank Submission: KX793760
> BO29011.complete
GAAGTTATCAGTCGACATGGTCATCATGATATTTGTGCTGCTACTCTTAT
TAGGAGTGACCAGTTCCTGGGCCACAGACTATGAATTATTGCTCGAGGAT
CCGGACATATTTTCGACGTGCACTGATGGTCCTCCCGGATCCATCAACAT
CCGCCAGGCACTCAACTTAGACGACATTGTAATCGACCAGAAAGGGGATA
TACTTCATGTATCCGGGAACGCCACCGTCGTGTGGGATGTGCAGCCCACC
GATCGGATTACTGCGAGACTTGATGTTTTTCACTTCAACCGCGGCACTTG
GGAGCCCACTGTCTTTAGCATGGCCACCCAGAACTTTTGCTCCATCATGT
ACGACAAGAACCAGTATTGGTATAAGTATTGGACAAGGTTTATAACCAAT
CGCCATGAGGTGGAAAAGAAGTGCTTCAGAGGGCCTGATACCGTTCTGGT
ACACGAGCCCTTCGATCTCATACTAAAATTTGAGAATTTTCGTGGACCTC
TTCTTAGAGGACGTCATAAACTTGTCATATTGTTTAACGCACTAGATGAG
AGGAATATACCGCGCCCAAACCCAATTTGTTTGGAGATCATAGGAGAACC
ACTAAAGTTGCAGGCAAGCTTTCTAGACCAT
BO29011.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:30:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CheB42b-RA | 591 | CG33351-PA | 1..588 | 26..613 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:30:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CheB42b-RA | 674 | CG33351-RA | 1..597 | 17..613 | 2985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:30:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6943749..6943995 | 263..17 | 1235 | 100 | Minus |
| 2R | 25286936 | 2R | 6943507..6943683 | 439..263 | 885 | 100 | Minus |
| 2R | 25286936 | 2R | 6943173..6943346 | 613..440 | 870 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:30:27 has no hits.
BO29011.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:35:31 Download gff for
BO29011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheB42b-RA | 1..588 | 26..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:02:39 Download gff for
BO29011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheB42b-RA | 1..597 | 17..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:20:46 Download gff for
BO29011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheB42b-RA | 1..597 | 17..615 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:20:46 Download gff for
BO29011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6943507..6943683 | 263..439 | 100 | <- | Minus |
| 2R | 6943171..6943346 | 440..615 | 98 | <- | Minus |
| 2R | 6943750..6943995 | 17..262 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:02:39 Download gff for
BO29011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2830676..2830851 | 440..615 | 98 | <- | Minus |
| arm_2R | 2831012..2831188 | 263..439 | 100 | <- | Minus |
| arm_2R | 2831255..2831500 | 17..262 | 100 | | Minus |
BO29011.pep Sequence
Translation from 16 to 631
> BO29011.pep
MVIMIFVLLLLLGVTSSWATDYELLLEDPDIFSTCTDGPPGSINIRQALN
LDDIVIDQKGDILHVSGNATVVWDVQPTDRITARLDVFHFNRGTWEPTVF
SMATQNFCSIMYDKNQYWYKYWTRFITNRHEVEKKCFRGPDTVLVHEPFD
LILKFENFRGPLLRGRHKLVILFNALDERNIPRPNPICLEIIGEPLKLQA
SFLDH
BO29011.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:23:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CheB42b-PA | 196 | CG33351-PA | 1..196 | 4..199 | 1058 | 100 | Plus |
| CheB42c-PB | 196 | CG33350-PB | 4..195 | 7..198 | 633 | 56.8 | Plus |
| CheB38c-PA | 198 | CG14405-PA | 5..197 | 7..199 | 524 | 46.1 | Plus |
| CheB38b-PA | 197 | CG33321-PA | 5..192 | 7..194 | 485 | 42 | Plus |
| CheB38a-PA | 197 | CG33320-PA | 7..197 | 9..199 | 477 | 43.5 | Plus |
