BO29020.complete Sequence
433 bp assembled on 2011-08-25
GenBank Submission: KX797252
> BO29020.complete
GAAGTTATCAGTCGACATGAATATCTTTATCTCCTTAATATTGGTAGTGC
TGGCCATTTTATCTTTTGCTGACCACACCGTGGCAGACGGAGATCGGCAC
CTAAATGAGGACTTAAATCGAGCGACGGTAAAGAAGACTAAGTATGGTTG
GCAATGTGCCGGGGTGACGTGCCCCATAAAGTTTACGGCATCTTGTAAGG
TAACAAAGGTCCTAAAGCCCTCTGATCTACAGCACACTGAGCTCCTGATT
TTGTGCATGGATAAAAACGATAAGCCTATGTGTGGGATAACACGAACTCG
AAAAGGGGTAATACAGGAAGTTCTGGACGTGGATGAAAACGGAAATACGA
TATATGACAAAAAGGAAGTTATTTCGGAGAACGATGGTACTAAAATCCCT
AGGTGCCCACGAAAGGCAAGCTTTCTAGACCAT
BO29020.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:54:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sfp78E-RA | 402 | CG42607-PA | 1..399 | 17..415 | 1995 | 100 | Plus |
| Sfp78E-RB | 453 | CG42607-PB | 117..450 | 82..415 | 1670 | 100 | Plus |
| Sfp78E-RB | 453 | CG42607-PB | 1..67 | 17..83 | 335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:54:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sfp78E-RA | 778 | CG42607-RA | 147..545 | 17..415 | 1995 | 100 | Plus |
| Sfp78E-RB | 805 | CG1-RB | 239..572 | 82..415 | 1670 | 100 | Plus |
| Sfp78E-RB | 805 | CG1-RB | 123..189 | 17..83 | 335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:54:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21683331..21683602 | 415..144 | 1360 | 100 | Minus |
| 3L | 28110227 | 3L | 21683776..21683842 | 83..17 | 335 | 100 | Minus |
| 3L | 28110227 | 3L | 21683665..21683726 | 143..82 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:54:43 has no hits.
BO29020.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-25 14:33:21 Download gff for
BO29020.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp78E-RA | 147..545 | 17..417 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:40:33 Download gff for
BO29020.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp78E-RA | 147..545 | 17..417 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:45:38 Download gff for
BO29020.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp78E-RA | 147..545 | 17..417 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:45:38 Download gff for
BO29020.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21683329..21683602 | 144..417 | 99 | <- | Minus |
| 3L | 21683665..21683725 | 83..143 | 100 | <- | Minus |
| 3L | 21683777..21683842 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:40:33 Download gff for
BO29020.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21676429..21676702 | 144..417 | 99 | <- | Minus |
| arm_3L | 21676765..21676825 | 83..143 | 100 | <- | Minus |
| arm_3L | 21676877..21676942 | 17..82 | 100 | | Minus |
BO29020.pep Sequence
Translation from 16 to 433
> BO29020.pep
MNIFISLILVVLAILSFADHTVADGDRHLNEDLNRATVKKTKYGWQCAGV
TCPIKFTASCKVTKVLKPSDLQHTELLILCMDKNDKPMCGITRTRKGVIQ
EVLDVDENGNTIYDKKEVISENDGTKIPRCPRKASFLDH
BO29020.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:53:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sfp78E-PA | 133 | CG42607-PA | 1..133 | 1..133 | 701 | 100 | Plus |
| Sfp78E-PB | 150 | CG42607-PB | 1..150 | 1..133 | 673 | 88.7 | Plus |
