BO29061.complete Sequence
1627 bp assembled on 2011-08-24
GenBank Submission: KX799102
> BO29061.complete
GAAGTTATCAGTCGACATGGCGGACAGCAGGGAACGGATTCGTGGACCCT
CCAGGGATGGTCGCGAGTTCCTGACCAGTCCGCGTCAGGTTCTTCGTCGG
CTGATGCTCCTCTCGGAGGGCAGACAGTACAGGGAGGCTGCTGGCGTGGT
GGGCAGACTGGGTCCCTCGGTTCTCAGATCAGTGATCGCTGAGCTTCCGC
TGGACCTGCTGCTGGAGCACCTGCCTCACAGTGCCTACCTTCTGGAGTCT
TTCTTTACCAGATTGACCACCCTGAACACCACTCCCAAGCCAGATGTGCC
TAGTGAAACGGTGGCCTGGCAGTTGGTGCGTCTGTTCGCTAATCCCCATG
AATCAGGACTCCGGCAGAGATGCACTCGACTCCTGCAGGCCTTGGCTCAG
TACGAACCAGGGCTCCGGCAGACTTTGAGGGAAAGAAGACGCAGTTTTGA
TAACGCTGTACAAGGTCTTGGGGTCCATGGACTGACCACCGATGCCTCGG
GTCAGCTTATTTCCCTACATGTAGCCCTGAAAACCGAGCTGCAACGCCAT
GTGGATACCTACAAGATGGCCATTCACAAGCTGGAGGAGCTGAGCATGGT
GACTGTCAACCAAGACCCTGCTCACTCCTCCCATCAACGATTGTTGGCCA
TCAATTATGGGGATATTCAGCAGCGACTGATCGACAACAAGACCCTGCTC
ACAATGCTAGACAAGCCGGCTCTCAAGCAGCTCCAAACCCTGGTCGAGAA
CCTCAGCACGCGGGTGGAGAACGACAAGGAGGTGCTCACCTGCGTGGGTC
AGGTGCGTCGTCTGGACGCACAGGCGCTCGTGGAGAAACGCCCTGCCGCC
GGTCTGCTGATGAACTTCTCCCGCGGCTGCGAGGTGGTGCTCCACATGAT
GGGCCCTGAAGGAGGTCCTCCGGGCTCCTCCCACTCCATTGGAAAGACCA
CTCCCCCAGGCGGCGCTAGCACGAGCAGCTGCAGCGATGGATATCACTCG
GACGACTCTGGAAGCGATGACAGCAGCGAAATGGTGTCGCTCTATCGGAA
TCTCTACGTCGAGAACCGAGCGGACGCCTTGGAGGCGTTGGACAGTCTTC
CCCAGATAAAACACGCGCACAGCCTCAAGGGGAAGATACTCTTCTCCATG
ATCGTGCTCTCCTTCCGCCTGTGCCACGGAATGCGGGAGCGAAAGGTCCT
GGAAGTTCGGCGAGTCCTGAATTGCCCCTTGGACAGCAGCAGTGAGACCA
CCTTGTCCCTGGACAGATCCGTTCGCCAGCACCTCTTCGAGACCGCCGAG
AGTTTCCCGTTGGGCGAGATCGAGCGGTCGGTGTTCAACCAGGTGCTATC
TACTCTGCACGAGTACCCCTGCCTGGAGTCCTGCCCCCCGTTGACGCACT
ACGTCAGTGCCTGTGTCCGACTGGCCTGGAGGATGATCAACCAGAAGGCG
CCGTACTACCTGGACATGGACTTCAACCTGGGTTTCCTGAGGCCCGAGAA
ACACGAGCGGCATCCCCAGGCGGACCGGCGATCGGATCTGATAAAAGCCT
TCCTCTGGCCCGCCCTGATGCAGAACAACCAGTGCGCCTTCAAGGCGGTG
GTGGCCACCGCAAGCTTTCTAGACCAT
BO29061.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:53:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11498-RC | 1596 | CG11498-PC | 1..1593 | 17..1609 | 7965 | 100 | Plus |
| CG11498-RB | 1596 | CG11498-PB | 1..1593 | 17..1609 | 7965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:53:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11498-RC | 2348 | CG11498-RC | 686..2278 | 17..1609 | 7965 | 100 | Plus |
| CG11498-RB | 2506 | CG11498-RB | 844..2436 | 17..1609 | 7965 | 100 | Plus |
| CG15529-RB | 1393 | CG15529-RB | 973..1300 | 1483..1156 | 1640 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:53:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30155059..30155826 | 1026..259 | 3840 | 100 | Minus |
| 3R | 32079331 | 3R | 30153279..30153606 | 1483..1156 | 1640 | 100 | Minus |
| 3R | 32079331 | 3R | 30155915..30156159 | 261..17 | 1225 | 100 | Minus |
| 3R | 32079331 | 3R | 30154754..30154886 | 1156..1024 | 665 | 100 | Minus |
| 3R | 32079331 | 3R | 30153092..30153220 | 1609..1481 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:53:19 has no hits.
BO29061.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:50 Download gff for
BO29061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11498-RB | 844..2436 | 17..1611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:52 Download gff for
BO29061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11498-RB | 844..2436 | 17..1611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:18 Download gff for
BO29061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11498-RB | 844..2436 | 17..1611 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:18 Download gff for
BO29061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30154754..30154883 | 1027..1156 | 100 | <- | Minus |
| 3R | 30153089..30153219 | 1482..1611 | 98 | <- | Minus |
| 3R | 30153281..30153605 | 1157..1481 | 100 | <- | Minus |
| 3R | 30155059..30155823 | 262..1026 | 100 | <- | Minus |
| 3R | 30155915..30156159 | 17..261 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:52 Download gff for
BO29061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25981637..25981881 | 17..261 | 100 | | Minus |
| arm_3R | 25978811..25978941 | 1482..1611 | 98 | <- | Minus |
| arm_3R | 25979003..25979327 | 1157..1481 | 100 | <- | Minus |
| arm_3R | 25980476..25980605 | 1027..1156 | 100 | <- | Minus |
| arm_3R | 25980781..25981545 | 262..1026 | 100 | <- | Minus |
BO29061.pep Sequence
Translation from 16 to 1627
> BO29061.pep
MADSRERIRGPSRDGREFLTSPRQVLRRLMLLSEGRQYREAAGVVGRLGP
SVLRSVIAELPLDLLLEHLPHSAYLLESFFTRLTTLNTTPKPDVPSETVA
WQLVRLFANPHESGLRQRCTRLLQALAQYEPGLRQTLRERRRSFDNAVQG
LGVHGLTTDASGQLISLHVALKTELQRHVDTYKMAIHKLEELSMVTVNQD
PAHSSHQRLLAINYGDIQQRLIDNKTLLTMLDKPALKQLQTLVENLSTRV
ENDKEVLTCVGQVRRLDAQALVEKRPAAGLLMNFSRGCEVVLHMMGPEGG
PPGSSHSIGKTTPPGGASTSSCSDGYHSDDSGSDDSSEMVSLYRNLYVEN
RADALEALDSLPQIKHAHSLKGKILFSMIVLSFRLCHGMRERKVLEVRRV
LNCPLDSSSETTLSLDRSVRQHLFETAESFPLGEIERSVFNQVLSTLHEY
PCLESCPPLTHYVSACVRLAWRMINQKAPYYLDMDFNLGFLRPEKHERHP
QADRRSDLIKAFLWPALMQNNQCAFKAVVATASFLDH
BO29061.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:22:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11498-PC | 531 | CG11498-PC | 1..531 | 1..531 | 2734 | 100 | Plus |
| CG11498-PB | 531 | CG11498-PB | 1..531 | 1..531 | 2734 | 100 | Plus |
