BO29069.complete Sequence
694 bp assembled on 2011-08-24
GenBank Submission: KX798707
> BO29069.complete
GAAGTTATCAGTCGACATGTATTATTTTCCTACCTCAGTCATGTGGAGCG
CTCTTGGTTTTTCGCCTCTTTTGGCTGTTTTGATTTTACCCAAATGGGCC
TCTTCTACAAAGATGAAAGCCTATTTAGATCTCGATACCCGATTAAAGAC
ACAATTACGGGGCTACTCGGAAGACCTGCAGGATCACATTAGTACCTTAA
ATCGTTATATAGATGATCGAAAATCTGAGCTAGATAAAGTGGGAAAAGAT
CCTGAAGTGTATCTGGGCAATCCTCTTAATAGCTTCTCTTTATTACACCA
TTTGCACTTTGATTGGCCAGCTTGGAGAAAGCTAATGGAAAAGCCCTTAG
CCACAGAGTACATAACCGAGATTCAAGAGATGTGGAGCGAGATGCCAACG
AAAGATGAATATACGAATTCCATTAAAGCTGCCAAGGATTTCCATAAGAA
CGAAACTCAGGGAAATTTTGAATTTAGTCCTTTGGAGTCTCTGCAAATCG
CTCTGCATGCATACGACAAGAAAAACTATACGGAGGCGGAGAACTGGCTA
AATATTACCTTAAATGGTTATAAAAACCTCAGTCTCCAAGAAAAGGATCT
TTATGAAGTTCTAAGTCCTGTTAGTGAGAGTCAGGTGGAGGATCTTTATA
CCAAAGTCAGGAAAATAAAAAATGAAGCAAGCTTTCTAGACCAT
BO29069.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:29:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34041-RD | 663 | CG34041-PD | 1..660 | 17..676 | 3300 | 100 | Plus |
| CG34041-RF | 1707 | CG34041-PF | 1..607 | 17..623 | 3035 | 100 | Plus |
| CG34041-RE | 1650 | CG34041-PE | 1..607 | 17..623 | 3035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:29:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34041-RD | 697 | CG34041-RD | 27..686 | 17..676 | 3300 | 100 | Plus |
| CG34041-RF | 1733 | CG34041-RF | 27..633 | 17..623 | 3035 | 100 | Plus |
| CG34041-RE | 1676 | CG34041-RE | 27..633 | 17..623 | 3035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:29:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30508663..30508864 | 475..676 | 1010 | 100 | Plus |
| 3R | 32079331 | 3R | 30508049..30508248 | 17..216 | 970 | 99 | Plus |
| 3R | 32079331 | 3R | 30508286..30508438 | 204..356 | 765 | 100 | Plus |
| 3R | 32079331 | 3R | 30508494..30508616 | 355..477 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:29:37 has no hits.
BO29069.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:35:29 Download gff for
BO29069.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34041-RD | 27..676 | 17..666 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:02:19 Download gff for
BO29069.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34041-RD | 27..676 | 17..666 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:20:29 Download gff for
BO29069.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34041-RD | 27..676 | 17..666 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:20:29 Download gff for
BO29069.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30508287..30508438 | 205..356 | 100 | -> | Plus |
| 3R | 30508496..30508616 | 357..477 | 100 | -> | Plus |
| 3R | 30508666..30508854 | 478..666 | 100 | | Plus |
| 3R | 30508049..30508236 | 17..204 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:02:19 Download gff for
BO29069.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26334218..26334338 | 357..477 | 100 | -> | Plus |
| arm_3R | 26334388..26334576 | 478..666 | 100 | | Plus |
| arm_3R | 26333771..26333958 | 17..204 | 100 | -> | Plus |
| arm_3R | 26334009..26334160 | 205..356 | 100 | -> | Plus |
BO29069.pep Sequence
Translation from 16 to 694
> BO29069.pep
MYYFPTSVMWSALGFSPLLAVLILPKWASSTKMKAYLDLDTRLKTQLRGY
SEDLQDHISTLNRYIDDRKSELDKVGKDPEVYLGNPLNSFSLLHHLHFDW
PAWRKLMEKPLATEYITEIQEMWSEMPTKDEYTNSIKAAKDFHKNETQGN
FEFSPLESLQIALHAYDKKNYTEAENWLNITLNGYKNLSLQEKDLYEVLS
PVSESQVEDLYTKVRKIKNEASFLDH
BO29069.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:23:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34041-PD | 220 | CG34041-PD | 1..220 | 1..220 | 1164 | 100 | Plus |
| CG34041-PE | 549 | CG34041-PE | 1..202 | 1..202 | 1076 | 100 | Plus |
| CG34041-PF | 568 | CG34041-PF | 1..202 | 1..202 | 1076 | 100 | Plus |
| CG31021-PB | 453 | CG31021-PB | 2..198 | 37..223 | 275 | 28.7 | Plus |
| PH4alphaPV-PA | 525 | CG31015-PA | 39..227 | 33..213 | 213 | 27.2 | Plus |
