BO29107.complete Sequence
1612 bp assembled on 2011-09-20
GenBank Submission: KX799125
> BO29107.complete
GAAGTTATCAGTCGACATGTGCAGAGCTTGGGTTGTTTTATTCGCTTGGA
TGCTGACGGCGGGACGAGGATCGGCCCGCCTTTTGGACGAGGATTGTGGA
GTTCCGATGCAATTAATACCGAAGATTGTAGGTGGAGTGGATGCGGGGGA
ACTGAAGAATCCGTGGATGGCCCTCATAAAAACCAATGACGAATTTATCT
GCGGAGGATCGGTAATTACTAACAAATTCGTCTTGACGGCCGCTCATTGT
ATGTGCACCGATGAGGAATGCATTGTAAAGTACACTCAGCTCACAGTTAC
CTTGGGTGTGTACCATCTACTGGCGACGGGTGAACACAATCATCCCCACG
AGATATACAACGTGGAGAGGGTCTACATCCACGATTCCTTCGCGATACAA
AACTATCGCAATGACATAGCGCTTCTTAGGTTGCAAAAAAGTATCGTTTA
CAAGCCACAAATCAAACCGTTATGTATTTTACTGAACGACCAACTCAAGC
CGCAAACGGATCTCATCCAGGAGTTCACAGCAATCGGCTGGGGCGTAACG
GGCAATGGGAAGATGAGTAACAATCTTCAAATGGTCAAGATCTACAGAAT
AGATAGGAAAATGTGCGAGGCAGCATTTTGGTACACTTTTGATTACCCAA
TGTTCTGTGCCGGCACCGCGGTAGGCAGAGATACCTGCAAAAGGGACTCC
GGTGGACCCTTGTACATACATATGTTGTTCGATGGCATCAAGCGAGCAAC
GCAGTTGGGAATCGTCAGCACTGGCACCGAAGATTGCAGAGGTTTCGGTA
TGTACACCGATGTAATGGGCCATATCGACTTTATCGAGCGCATTGTTCTG
GATGCGGACATTGAGGTGGTGCTACCCTATATAGACCTACTCGATGCTGG
GTGTCTGGGCAACGACACGTTGAACAGCTGGGATAGAAGTGGTCCCGATG
CGATCAGGTCCTTCGAGTGGTTGGCTGAGGTCTACAAGGATTCCTTTATA
ATCTCAAACGGCGCACTTATTTCGAAAACTTTCGTGGTGACAACGGCGCA
GTTGATTTCCGAAAGTACGGCATTAAAGGTTCAACTGGGACAAGGCGATG
TGCATACCTACGCTGTCGCATCTGTTCACAAGCATCCCAAATTCGTTAGC
CTGGCCCAAAACGACATAGCTCTGCTTAAACTGGGCGAGGAAGTGCAGTA
CACGGAATCGATTCGACCGATCTGCCTGCCCTCGCTAAGCAACAAAGCGG
AGCAGCAGAAGTTCCAAAGGCGTGCTGCTGATCCCGCCCTGAATCTCATA
GCCGTTGGCTGGGGCACGCCGACTAACGTGGTGGTGCGGCGAACAAATGC
CAGTAAGTGCTACCGGGAGGATCACCAAGACATCGGAGAGCAACAGTTGT
GCATGGAAAGCCCTTCTCCTCATCTCCTGCGCGTGGGCATTGGCAGTCCC
TTGGTAAACCCTCTAACCCACGGAAACAGGAGGGCATTCAGCCTGGTCGG
ACTGGCGAGCTTTGGCAGGTTAGAGCCTTTCGCTTCAAATGTCTACACCA
ATGTTCTCGAATACTTGGACTGGATCGGGGAAATGGTTAAGGCGGCAAGC
TTTCTAGACCAT
BO29107.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:53:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30091-RA | 1581 | CG30091-PA | 1..1578 | 17..1594 | 7890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:53:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30091-RA | 1681 | CG30091-RA | 14..1604 | 4..1594 | 7895 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:53:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15680906..15681642 | 292..1028 | 3685 | 100 | Plus |
| 2R | 25286936 | 2R | 15682011..15682400 | 1205..1594 | 1950 | 100 | Plus |
| 2R | 25286936 | 2R | 15680558..15680845 | 4..291 | 1380 | 98.6 | Plus |
| 2R | 25286936 | 2R | 15681814..15681944 | 1075..1205 | 655 | 100 | Plus |
| 2R | 25286936 | 2R | 15681698..15681743 | 1029..1074 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:53:25 has no hits.
BO29107.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:55:37 Download gff for
BO29107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30091-RA | 1..1578 | 17..1596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:25:19 Download gff for
BO29107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30091-RA | 27..1604 | 17..1596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:50 Download gff for
BO29107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30091-RA | 27..1604 | 17..1596 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:50 Download gff for
BO29107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15682012..15682400 | 1206..1596 | 99 | | Plus |
| 2R | 15680571..15680845 | 17..291 | 100 | -> | Plus |
| 2R | 15680906..15681642 | 292..1028 | 100 | -> | Plus |
| 2R | 15681698..15681743 | 1029..1074 | 100 | -> | Plus |
| 2R | 15681814..15681944 | 1075..1205 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:25:19 Download gff for
BO29107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11568076..11568350 | 17..291 | 100 | -> | Plus |
| arm_2R | 11568411..11569147 | 292..1028 | 100 | -> | Plus |
| arm_2R | 11569203..11569248 | 1029..1074 | 100 | -> | Plus |
| arm_2R | 11569319..11569449 | 1075..1205 | 100 | -> | Plus |
| arm_2R | 11569517..11569905 | 1206..1596 | 99 | | Plus |
BO29107.pep Sequence
Translation from 16 to 1612
> BO29107.pep
MCRAWVVLFAWMLTAGRGSARLLDEDCGVPMQLIPKIVGGVDAGELKNPW
MALIKTNDEFICGGSVITNKFVLTAAHCMCTDEECIVKYTQLTVTLGVYH
LLATGEHNHPHEIYNVERVYIHDSFAIQNYRNDIALLRLQKSIVYKPQIK
PLCILLNDQLKPQTDLIQEFTAIGWGVTGNGKMSNNLQMVKIYRIDRKMC
EAAFWYTFDYPMFCAGTAVGRDTCKRDSGGPLYIHMLFDGIKRATQLGIV
STGTEDCRGFGMYTDVMGHIDFIERIVLDADIEVVLPYIDLLDAGCLGND
TLNSWDRSGPDAIRSFEWLAEVYKDSFIISNGALISKTFVVTTAQLISES
TALKVQLGQGDVHTYAVASVHKHPKFVSLAQNDIALLKLGEEVQYTESIR
PICLPSLSNKAEQQKFQRRAADPALNLIAVGWGTPTNVVVRRTNASKCYR
EDHQDIGEQQLCMESPSPHLLRVGIGSPLVNPLTHGNRRAFSLVGLASFG
RLEPFASNVYTNVLEYLDWIGEMVKAASFLDH
BO29107.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30091-PA | 526 | CG30091-PA | 1..526 | 1..526 | 2782 | 100 | Plus |
| CG10764-PA | 523 | CG10764-PA | 24..512 | 21..520 | 562 | 32.2 | Plus |
| CG30187-PD | 451 | CG30187-PD | 1..449 | 51..525 | 453 | 30.7 | Plus |
| CG43110-PA | 483 | CG43110-PA | 4..479 | 8..524 | 435 | 28.4 | Plus |
| CG30090-PA | 291 | CG30090-PA | 20..277 | 18..277 | 424 | 38.3 | Plus |
| CG30090-PA | 291 | CG30090-PA | 43..278 | 309..525 | 223 | 28.8 | Plus |
| CG10764-PA | 523 | CG10764-PA | 43..270 | 306..530 | 215 | 26 | Plus |
| CG30187-PD | 451 | CG30187-PD | 1..222 | 319..531 | 193 | 28.1 | Plus |
