BO29111.complete Sequence
1498 bp assembled on 2011-08-26
GenBank Submission: KX795128
> BO29111.complete
GAAGTTATCAGTCGACATGAGTGGTATGCAAACCACAACTGTGGACCCAG
TACCCAGCCCCCCACAGGAAACCATCATCATCGCCACCGCGCCACCACCT
GAGCCCAGAAAACCGGCTGTGACCACTAATAACCGAGGATACTTTACCCG
CATCAATAAACAGAATTATGCGTCCTATACAGTTTTCTTCCTATTCATCT
ATGGTGGCATGGACATGGCAGCCAGCTTGGGCTGGAGTCAACCCTACAGC
GTCCTCCTATTCACGGAGTACTCGTACTGTTGGTTTGTAGGTGTCATCAT
TGGAGCGCTGGCCACCACTCTCACCATGTCTTTTCTGCCCAAGCTGGTCT
ACTATGTTTTTGGTGCTCTTATGCAACTAACTGGATCCATTATATTTACG
GCTGCAGACTATTCCGCCTGCCTGGCGGCCCGCTATTTGGCCGGGTTAGG
GATTGGCCTCATTACGGTGCCATTCCTCATTCACAATGCTGAGGTGGCAT
CTAACAACTTACGAGGAGTCAACGGCGGAATGGAGCAGTGCGGTCTAGCC
CTCGGAATTTTCTTTCAAGTGATTTTTACTACGGAGTGGACTTCATTAAT
TGACTCAAACCCAAACGAGATCCATGGCATCATAGGGATCGTCGTCTCAT
TGTTTGGTTTGGCGATGACTGCCCTGGTGGTAGAGTCGCCAATCTTCTTT
CTACGTCGAAATATGGAGAACAGGGCGCAGCAGAGTCAGGAGAAACTTTT
GAGACATAATCCCGGTGGCGTTAGTGCAGCTCTGAAGGAGGCCAGAAGGT
ATGTGGCGGAGAGCGACAACCGGACCCTGGGGGAGGAACTGGTGGCCTCG
GTGATGCCCTTCTTGAAAATGCTACTCTTTCGCTGCTTCGTGGCATTCTC
CTTCTCTCTGCCGCTGACCATGTCGATCATCTCGAGCACCGCAGTAGCGG
AGAAAGGACTCAGTCTTTGGCCAATCTACCTATTTGGCGTTCTTCGTGTG
ATTGGAGTAATGGTGGCTTTGATATTCCTGGACACTTTGGGTCGCAAGGC
GGTGTCCTTGGTGGGCCTCCTTGTTATGGCCGGACTAATGCTCGGATTGG
CGGGTCTATATGCCAACGTGACCAACTTAATTAGCTTTAACTTAATGACC
TCAGCCTGCAATATCGCATTGGCCTTCCAGGTATTCGCAGGTCTCTTCGT
GTGCAGCTCATCCGCATACATGGGCGAGGCTTTTCCCATGCGGGTCAAGT
CGTTCCTGGTCGGAGTGATTGTCATCATTGAGCAGATCGTCCATATCGTG
GTAATTGCCTGTGTAAGCTCTGTGCCCAACAAGGACTTCTTCTTCCAGTA
TTTTTTGGCCGTAGGCATTATAATGCTGGTGGGCATGATCTTCTTTACCG
TGTCTATGCCGGAGACAAAGAAGATGACGCTGAGGAAGGCTGGCCACCGT
TTTCAGAAGTGGTACGACGTACAGATGTACGCAAGCTTTCTAGACCAT
BO29111.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:11:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6901-RA | 1458 | CG6901-PA | 1..1455 | 26..1480 | 7275 | 100 | Plus |
CG17929-RB | 1476 | CG17929-PB | 1166..1235 | 1170..1239 | 215 | 87.1 | Plus |
CG17930-RA | 1509 | CG17930-PA | 1202..1272 | 1170..1240 | 190 | 84.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:11:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6901-RA | 1581 | CG6901-RA | 40..1503 | 17..1480 | 7320 | 100 | Plus |
CG17929-RB | 1670 | CG17929-RB | 1247..1316 | 1170..1239 | 215 | 87.1 | Plus |
CG17930-RA | 1653 | CG17930-RA | 1296..1366 | 1170..1240 | 190 | 84.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:11:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16323926..16325050 | 356..1480 | 5625 | 100 | Plus |
3R | 32079331 | 3R | 16323677..16323854 | 180..357 | 890 | 100 | Plus |
3R | 32079331 | 3R | 16323454..16323619 | 17..182 | 830 | 100 | Plus |
3R | 32079331 | 3R | 16326908..16326977 | 1170..1239 | 215 | 87.1 | Plus |
3R | 32079331 | 3R | 16329265..16329335 | 1170..1240 | 190 | 84.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:11:56 has no hits.
BO29111.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-26 13:54:10 Download gff for
BO29111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6901-RA | 1..1455 | 26..1482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:50:03 Download gff for
BO29111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6901-RA | 40..1503 | 17..1482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:54:01 Download gff for
BO29111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6901-RA | 40..1503 | 17..1482 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:54:01 Download gff for
BO29111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16323680..16323852 | 183..355 | 100 | -> | Plus |
3R | 16323454..16323619 | 17..182 | 100 | -> | Plus |
3R | 16323926..16325050 | 356..1482 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:50:03 Download gff for
BO29111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12149176..12149341 | 17..182 | 100 | -> | Plus |
arm_3R | 12149402..12149574 | 183..355 | 100 | -> | Plus |
arm_3R | 12149648..12150772 | 356..1482 | 99 | | Plus |
BO29111.pep Sequence
Translation from 16 to 1498
> BO29111.pep
MSGMQTTTVDPVPSPPQETIIIATAPPPEPRKPAVTTNNRGYFTRINKQN
YASYTVFFLFIYGGMDMAASLGWSQPYSVLLFTEYSYCWFVGVIIGALAT
TLTMSFLPKLVYYVFGALMQLTGSIIFTAADYSACLAARYLAGLGIGLIT
VPFLIHNAEVASNNLRGVNGGMEQCGLALGIFFQVIFTTEWTSLIDSNPN
EIHGIIGIVVSLFGLAMTALVVESPIFFLRRNMENRAQQSQEKLLRHNPG
GVSAALKEARRYVAESDNRTLGEELVASVMPFLKMLLFRCFVAFSFSLPL
TMSIISSTAVAEKGLSLWPIYLFGVLRVIGVMVALIFLDTLGRKAVSLVG
LLVMAGLMLGLAGLYANVTNLISFNLMTSACNIALAFQVFAGLFVCSSSA
YMGEAFPMRVKSFLVGVIVIIEQIVHIVVIACVSSVPNKDFFFQYFLAVG
IIMLVGMIFFTVSMPETKKMTLRKAGHRFQKWYDVQMYASFLDH
BO29111.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:58:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6901-PA | 485 | CG6901-PA | 1..485 | 4..488 | 2461 | 100 | Plus |
CG17929-PB | 491 | CG17929-PB | 7..491 | 8..488 | 1197 | 51.1 | Plus |
CG17930-PA | 502 | CG17930-PA | 1..502 | 4..488 | 1163 | 46.6 | Plus |
CG42826-PA | 473 | CG42826-PA | 8..470 | 26..484 | 501 | 28.8 | Plus |
CG32054-PA | 563 | CG32054-PA | 91..558 | 16..482 | 466 | 29.4 | Plus |