BO29113.complete Sequence
2056 bp assembled on 2011-09-19
GenBank Submission: KX799095
> BO29113.complete
GAAGTTATCAGTCGACATGGCGCGGTTTAGTGGAGTTGTACTGCTCCTGG
CAATCGTCCTTCTTGCCGTTTTTGTGGCACAAGGCCTGGCAGAGAAGAAC
GCCAATAGGCAGAAGCAGCAGAAGCCCAGACCGGGAAATCAAAACTTTGG
TATCCAGAAAAATAAGCGTCCAAAGCCCCAAAAAGTGCAGAAACAGAAGC
CCAACAAGCAACAGGGTCAGAATGGTCAAGAGCCAAAGGTATTTACCACA
ACGGTTCCTGATTTGGGCAGGCTCCGTGGACGAACTCTCACCACCGATTG
GACAGGGCAGAAGATAATGCAGTTCTTGGACATTCCCTACGGCAAAGCAG
AGCGATTCAGGCCAGCTGAGCCCGCACCTTCCTGGAAGGGCGTCCTTCCC
GCCCATCGACCACACGCCGGCTGTCCATCCATTCAGGATCTGATTGTGTT
CGCCAAGCTGGAGGAAGATGGCTTCGATGTGGAAGACTGCCTGCGTCTGT
CAGTGAACACCAAGGCGATGGAGGGCAAGTCCCTGCCGGTGATGGTGTAC
ATCCATGGCGATTTCTTCTACGACGGTGACTCTGTGGAGGCAGCTCCCGG
GTATTTGTTGGAGCACGATGTGGTCCTGGTGTCCGTGCGTTATCGTCTGG
GACCCTTCGGCTTTCTGTCCACGCTGACGGACGAGATGCCTGGCAATGCA
GCGGTCACGGACATCATCCTGGCCCTCAAGTGGGTGCAGCAGCACATCGC
ATCCTTCGGCGGCGATCCACAGCGGGTGACGCTCTTCGGCCAAGTGGGCG
GAGCAGCATTGGTCAACGTGCTCACCCTGAGTCCTGCGGTTCCGGCCGGC
CTCTTCCATCGCGTGATCTATCAGTCTGGGACGGCACTGTCGCCCGCCTT
CATCACGGATGCTCCACTGGGCGCCACCAAGGCCATTGGCCGGATCGCGG
GATGCAAACAGTCCACTAAGGTGGATCAGCTGAACAAGTGTCTAAACCGT
CTAAACGCAACTATGCTTCTGGCCGCCTTCAGCGTCCACGGCGAAAATCA
ACCATCCTTGTCCGGCGGAGCCTACGGTGGTGTACAGCTGGTGATCGGCG
GACCATCTGGCATTCTGCCGGAGCATCCAGGTCGTCTGCTGGCCGCCGAG
AAGTTCCAGGCCTATCCCACAATGGGCGGTAGCGTTAAGCATGGAGGCAC
CTTCATGCTGAGAGACATTTTTGCGGATATCTTTAATGAAACCATTTTGG
ACGACACGATGACCGGAAGGCAGTACATCGACACCATTATCGAACAAGCT
AATGGAGCCGATCCCAGTGGATCGTGGAAGGAGTTCTCCGACGAGGAGAT
ATTCACGCAGAATGATGTTAAGAATGGCACCTTTAAGCGTCTGACCCCAG
GGCTGATCGATCTTTGCAGCACTATTTCCCTGAAGAATCCTGTATTATTG
GTCCTGCAGGCCAACGCAAAGAAGCTTCCCAATAGCACTTACCTGTACAG
CTTCGACTATGAGGGCGAGCAGAATCGCTATGCCACAGGTGAGGATGAGG
CCAACTTTGTGCCCTTCGACATGGGTGTCTCACTGACCGACGACAACCTG
TACCTGTTCCCGTGGCCACGATTCCTGGCCTTGAACTCCAACCGCGATCT
CAAGGTGGCTCGTCGCATGGTGGCCCTTTGGACGTCCTTCGCAACAACGG
GAGTTCCCCAAGCACCTGGACTGCCCGCCTGGCCAGCGATGAACGACGAG
ACGGGACCCTACATGAAGATCGATCGGACTGTCAGTTTCGGGGACAATTA
CCTGGATGAGTACCGCATCGCCGTGGAGGAGGCAAAGCACGGCTATAACC
TGGTCAACGACGAGTACTACGATCTGCAGGAAGCCCTTTTGGCGGCCAGC
AAACTGGATAGTTTGAACGATGCCAACGAGGAGGATGAAGAGGATCAGGA
CGATGCTGAGGGACAGAGAGCTGCCAGTCAAACTGGTGGCCAAAACTGGG
TCTTCATCGCTAGGAAGTCAACGCGCGTCCAGAAACAGGCAAGCTTTCTA
GACCAT
BO29113.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:45:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9289-RA | 2025 | CG9289-PA | 1..2022 | 17..2038 | 10110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:45:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9289-RA | 2129 | CG9289-RA | 27..2048 | 17..2038 | 10110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:45:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8682364..8683061 | 1214..517 | 3490 | 100 | Minus |
| 2L | 23513712 | 2L | 8681406..8682032 | 2038..1412 | 3135 | 100 | Minus |
| 2L | 23513712 | 2L | 8684006..8684350 | 361..17 | 1725 | 100 | Minus |
| 2L | 23513712 | 2L | 8682102..8682300 | 1411..1213 | 995 | 100 | Minus |
| 2L | 23513712 | 2L | 8683150..8683306 | 517..361 | 785 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:45:42 has no hits.
BO29113.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:42 Download gff for
BO29113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9289-RA | 1..2022 | 17..2040 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:13 Download gff for
BO29113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9289-RA | 27..2048 | 17..2040 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:56 Download gff for
BO29113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9289-RA | 27..2048 | 17..2040 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:56 Download gff for
BO29113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8684006..8684350 | 17..361 | 100 | | Minus |
| 2L | 8681404..8682032 | 1412..2040 | 99 | <- | Minus |
| 2L | 8682102..8682298 | 1215..1411 | 100 | <- | Minus |
| 2L | 8682364..8683060 | 518..1214 | 100 | <- | Minus |
| 2L | 8683150..8683305 | 362..517 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:13 Download gff for
BO29113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8681404..8682032 | 1412..2040 | 99 | <- | Minus |
| arm_2L | 8682102..8682298 | 1215..1411 | 100 | <- | Minus |
| arm_2L | 8682364..8683060 | 518..1214 | 100 | <- | Minus |
| arm_2L | 8683150..8683305 | 362..517 | 100 | <- | Minus |
| arm_2L | 8684006..8684350 | 17..361 | 100 | | Minus |
BO29113.pep Sequence
Translation from 16 to 2056
> BO29113.pep
MARFSGVVLLLAIVLLAVFVAQGLAEKNANRQKQQKPRPGNQNFGIQKNK
RPKPQKVQKQKPNKQQGQNGQEPKVFTTTVPDLGRLRGRTLTTDWTGQKI
MQFLDIPYGKAERFRPAEPAPSWKGVLPAHRPHAGCPSIQDLIVFAKLEE
DGFDVEDCLRLSVNTKAMEGKSLPVMVYIHGDFFYDGDSVEAAPGYLLEH
DVVLVSVRYRLGPFGFLSTLTDEMPGNAAVTDIILALKWVQQHIASFGGD
PQRVTLFGQVGGAALVNVLTLSPAVPAGLFHRVIYQSGTALSPAFITDAP
LGATKAIGRIAGCKQSTKVDQLNKCLNRLNATMLLAAFSVHGENQPSLSG
GAYGGVQLVIGGPSGILPEHPGRLLAAEKFQAYPTMGGSVKHGGTFMLRD
IFADIFNETILDDTMTGRQYIDTIIEQANGADPSGSWKEFSDEEIFTQND
VKNGTFKRLTPGLIDLCSTISLKNPVLLVLQANAKKLPNSTYLYSFDYEG
EQNRYATGEDEANFVPFDMGVSLTDDNLYLFPWPRFLALNSNRDLKVARR
MVALWTSFATTGVPQAPGLPAWPAMNDETGPYMKIDRTVSFGDNYLDEYR
IAVEEAKHGYNLVNDEYYDLQEALLAASKLDSLNDANEEDEEDQDDAEGQ
RAASQTGGQNWVFIARKSTRVQKQASFLDH
BO29113.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:02:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9289-PA | 674 | CG9289-PA | 1..674 | 1..674 | 3522 | 100 | Plus |
| CG9287-PA | 625 | CG9287-PA | 15..578 | 57..618 | 1192 | 44 | Plus |
| Glt-PD | 1026 | CG9280-PD | 23..590 | 38..601 | 790 | 33.9 | Plus |
| Glt-PA | 1026 | CG9280-PA | 23..590 | 38..601 | 790 | 33.9 | Plus |
| Est-Q-PA | 559 | CG7529-PA | 31..550 | 67..609 | 711 | 33.4 | Plus |
