BO29114.complete Sequence
1972 bp assembled on 2011-09-20
GenBank Submission: KX796135
> BO29114.complete
GAAGTTATCAGTCGACATGAGACTTTGTGTGTTCTTATCATTGTTGGGAC
TTAATATTCACTTGGAGGTGCTTGCTAATGGCATCGCAAATCGTTACTTT
TTGGAAAAGCAGCGTTTTTTGTTGGAAATTCTACATCATGTTAACGAACC
TTTGATGAACGAACAGTGGCGATTATTGGGAAAACAATTGGTGACAGATA
AGGAACAGTATGTGGTCTACAACGAGCAAATGACACGTTTCTATGAAGAC
TTCAGTTTGGGAAAACTTTTACATCGAAATGTACGATATAATCCCCTCTA
TGCCGATCATTATCGGCAGATGCTGGGATTATATCAATTTTTCTACAACG
CCAGGGATTGGTATACCTTATGGCAAAATATAAGCTGGGCCCGAGTTCAT
GTGCATCCGTGTATTTTTGTTCAAGCTCTCACTCAATTGATCCTCAAAAG
AGAGGACTATCAGGCCTTGATTATGCCCAAGATCTATGAATTGTGGCCAG
AATCGTATCACGATGATGTAACAGTGAGAAAAGCAAGAAATTTCAATTTT
GCCAACTGGATAAGATACGTGAATATGACCGATGTAGAAGAAATCCATCC
GCAAAAATTGGAACCTTTAAATTTGGAAGGTAATCTTCGAGGTACCATTG
AATGGTTTCAGGCCATGGCTGATGTGAATATTCTAAGGATGAATGAACAG
AAAAAGAGAAATAAGTTAGAACACTTGTTAGAAGATATAGATTGGCAATC
GTATTGGTATAATCTGAACATGGGAGTGATTTTAACAGCCGAAAATTCAG
ATCAGTTGCGCGAATGGTGCTACTATCAGTTGAGTCAAATACTGGCTCGT
TATAAACTTGAATGTTATGGCCAAAAGATGGCTTACAAGAGGCTGACACA
AAATCGTGGCATAAACGAGGAATTCCAATTTATAACTAAAAAGATATCAG
AATTGGAGGCAAAAGTTGGGGATACCATTTCATTTCAAAGTATTCAGCTA
ACTAATGGAAGTCGTATTAATCTGAATGAGAACAACAATTGGCTAATCGG
ACTTGAAGAACTATTTCCCTATGATTGGACACAATTAGCTGTGGATGAAG
TTATCGAAACTAATATTTTACTGGATATTCGAACTATAGTGAGATCCGAA
GACTTTTATTACTATGCTGAGCGATTATTGGATTCTTATCGCTGGTATCG
TCAGGTTTTCCAACCGAATAACCAGAAAACATTTATTCCCAGTGATCTTC
GCATAGATGATATGCAGATAACTCCTTTGATTACCTACGATCAACCTGTT
GATGTTGATATTAGTAATATTCTGGCCGCCCAACATTTTTACTTAGCCGG
CCAGTTTGTGTGGCCTTTTACTTTGCAACATCGACAATTTCGACTGCAAC
ATAAGGATTTCTCATACAACCTGCTCATATCGAGTAACAAAACACAATCG
ACCATTTTCCGAGTTTTTCTAACCACTTCTGAGCGAGGAGGAAACATTCA
AAGAGAGCCATTCTATCAACTCGATTCGTTCCTGACTGTGATATACCCTG
GATTGAATCGAATAACCAGGGAATCGAAGGAGTTTAAAGGCCTCGCTGGA
GATCACATCTCATACACCGAACTCTATCAGTTTGTTAAATTGGCCGAAAG
GGATGAATTCGACTTTCCCCTCAATATATCAACTGCAAATTGTGCATTCC
CTCGACGTCTGATTTTACCGCGTGGTGGTTTGGGAAATCCCCTTAAATTG
CGTCTTCTGATCGTGGCCAGTGTGTATGATTTTAGGGCTCGGCAGGAAAA
CGAACTTAATTGTGACTTTAGCCAGGGTGTCAGTCGATGGGATGAACTGC
CCTTGGGTTACCCCTTCGAAAGATTTCTGGAAGATGACGCCCTGGCTGTT
GAAATCTCCGGAGATCATGTGTTCTGGAAGGATGTGCATATCCTGCATGA
GAATGCAAGCTTTCTAGACCAT
BO29114.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:26:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7320-RB | 1941 | CG7320-PB | 1..1938 | 17..1954 | 9690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:26:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7320-RB | 2023 | CG7320-RB | 8..1949 | 13..1954 | 9695 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:26:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18201823..18203563 | 214..1954 | 8705 | 100 | Plus |
| 3L | 28110227 | 3L | 18201635..18201766 | 86..217 | 660 | 100 | Plus |
| 3L | 28110227 | 3L | 18201501..18201574 | 13..86 | 355 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:26:20 has no hits.
BO29114.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:55:45 Download gff for
BO29114.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7320-RA | 1..1868 | 87..1956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:29:44 Download gff for
BO29114.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7320-RB | 12..1949 | 17..1956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:25 Download gff for
BO29114.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7320-RB | 12..1949 | 17..1956 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:25 Download gff for
BO29114.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18201505..18201574 | 17..86 | 100 | -> | Plus |
| 3L | 18201636..18201763 | 87..214 | 100 | -> | Plus |
| 3L | 18201824..18203563 | 215..1956 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:29:44 Download gff for
BO29114.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18194605..18194674 | 17..86 | 100 | -> | Plus |
| arm_3L | 18194736..18194863 | 87..214 | 100 | -> | Plus |
| arm_3L | 18194924..18196663 | 215..1956 | 99 | | Plus |
BO29114.pep Sequence
Translation from 16 to 1972
> BO29114.pep
MRLCVFLSLLGLNIHLEVLANGIANRYFLEKQRFLLEILHHVNEPLMNEQ
WRLLGKQLVTDKEQYVVYNEQMTRFYEDFSLGKLLHRNVRYNPLYADHYR
QMLGLYQFFYNARDWYTLWQNISWARVHVHPCIFVQALTQLILKREDYQA
LIMPKIYELWPESYHDDVTVRKARNFNFANWIRYVNMTDVEEIHPQKLEP
LNLEGNLRGTIEWFQAMADVNILRMNEQKKRNKLEHLLEDIDWQSYWYNL
NMGVILTAENSDQLREWCYYQLSQILARYKLECYGQKMAYKRLTQNRGIN
EEFQFITKKISELEAKVGDTISFQSIQLTNGSRINLNENNNWLIGLEELF
PYDWTQLAVDEVIETNILLDIRTIVRSEDFYYYAERLLDSYRWYRQVFQP
NNQKTFIPSDLRIDDMQITPLITYDQPVDVDISNILAAQHFYLAGQFVWP
FTLQHRQFRLQHKDFSYNLLISSNKTQSTIFRVFLTTSERGGNIQREPFY
QLDSFLTVIYPGLNRITRESKEFKGLAGDHISYTELYQFVKLAERDEFDF
PLNISTANCAFPRRLILPRGGLGNPLKLRLLIVASVYDFRARQENELNCD
FSQGVSRWDELPLGYPFERFLEDDALAVEISGDHVFWKDVHILHENASFL
DH
BO29114.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:12:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7320-PB | 646 | CG7320-PB | 1..646 | 1..646 | 3443 | 100 | Plus |
| Lsp1gamma-PA | 772 | CG6821-PA | 26..748 | 23..644 | 762 | 28.6 | Plus |
| Lsp1beta-PB | 789 | CG4178-PB | 27..755 | 23..644 | 719 | 27.1 | Plus |
| Lsp1beta-PA | 789 | CG4178-PA | 27..755 | 23..644 | 719 | 27.1 | Plus |
| Lsp1alpha-PA | 816 | CG2559-PA | 285..782 | 213..644 | 448 | 26.5 | Plus |
