BO29115.complete Sequence
3313 bp assembled on 2011-10-14
GenBank Submission: KX798355
> BO29115.complete
GAAGTTATCAGTCGACATGTGGCCCCACCGCCACCAACGACATCTGCTAA
CGGCGGCAGCCACGCTCTGCTGTCTCTTGGCCATCATCGTCCAGCCGGCC
CTTTCGGATGAGCCCCCCATCCTTACATCCTCATCAACACCACCATCCTC
AGCAGCAGTCTCGGCCCCTGGCGATCTCCCCCAGAATTTGACGGTGGAGG
CAGCGGCCACTGAAGCCCTGAGTGACAGCAGCGGCAAGGAGCTTAATAAG
CAGCCAGCCGAGCAACTCATCCGCGAGGTCATCGAAGGTCCAAACTTGGC
CGACGAAGTGCGCGTGGATCCGGATCTGGAGAGGGAACTCAAACGGGAAG
GGGAAGATCCTATAGAAACAGAAACCGAAACGGAGTTCGTCGGTGTTCCA
GGCTTTCTGCCCACTGCTCTGCCTCCCAAAGATTCAGACAGTCCCACCAA
TGGACATGGTTACATCCAGTTCGAGATCAACGATGAGCTGCCAGTGGAAG
TGGCTCGTCGACAAAGACCCATTGAGCAGACAGTGACCCGCTCGCGAACG
GAAACCGTGAACGAGGTGCTGTCCAATCTGTTCCCCAAGGGATTCTCGGA
CATTTTCCGATTTAGTGGCAATACAGATACATCCACCACCACGTCTACGA
CCACGAATAAGGCGGTGGTCCGGCCAACAGTTGTGGATGTGGTCAGTACC
ACAGAGGCAGCCAGCACTGAAAAGCAAACGAAGCCTCCAGCGCCGAATGC
CACCTACTACAGTTACCAAACCACAGTCACGAAGGAATACCGTCGAGAAT
TGGGACCAGGTCACACGGAGATAGTGGTTGAGCAGATTAGGGATCCGGGA
TTCCGAGATGGCAGTAACCACATTTCCCGAGATGAGCTGCTTAGGATCAA
TCGAGCTGCTGTGGCGGCTCCAGTGCTGCCCAGTGTGCTGCTCCAACCGG
AGGGCGATGACAACGAGACTCTAGTGGCAGCAGAAAGTTCTCCAATTGTG
ATCCTGGGCGAACACGATCCGGACCTGGAAGAGGGGCAGGAGATCAATGA
CAACCAGATTGCGGAGACACGCCACGTGGGCCGGGAGGCCTACCAGCAGC
GAGTTCCAGTTCCAAATTTCAATGGCATCGAGAGTTATGCCAACCAAAAG
GGTCCCGGTCAGGATCAGGAGATCAATGTGCACATCGTACACGACGGACC
ACAGGGAAAACCTCAGCAGGCAGAGGCAAAGACACCCAAGGAGTCCCAGT
CGCAGCCTGCGCAGCAGGCCTTGGATCACTTCCAGGCGCACAGTGAGCAG
AGATTCCAGCAGCATCATCCCAGTCAAGAGGCACCATCACGGCAATTCCT
CAAGAGCTTCAATCCCATTGTCTCCGGAAGTGGCGACGGACCCCTCCCGA
AGGGCAGTTTCCACTACGAGGTGCAGAATCCTCCACAGCGCCCGAATCCA
CGGACGCCGAAGGAAGGAGACTACGCCGGCCAATTTGTGAAACCTGCTGC
CCAGTTGGCCTATCAACAGGAGCTTAGCCAGGTGATACCACAAGAGCAGA
GCAAGCCGCAGCAGCAGTCGGAGTTGCTGCACACCAAGGCCATATCGTCG
CCTGCGCCGGATGTCCAGCAATATTCTGGCTATGCAGGTCCCACACCCGT
TTCCGCCACTCCAAATAGTCTGGTGTTTGTGACCTTGAACACTCCAAGTC
CACCCCACTCCTCGGCGGCACCATCCATTGCGCATACGCCATTTGAGCCA
GGAGTCCAGATCACAGTGAATCACCCGGCTCCCCATAACTACGTTGCCGA
GGCTCATGCCGAGCCCTCCCAGACCATCATCCAACATGCTCCAGCTCCAG
CTCCAAAGAAGTCCACTCCATACACCTTTGTGGAGGTTCAGAAGTCTGTG
AACATCCACAACAAGCTAATCACGGAGAAGGATGGCCGATTGGTGGAGCA
GCACGAGACCATTTACCCCCAGCCATATCCGCAGAATCACCTTTCGCAGG
CACCTGATCCTTCCAAGAGTTACGCATCTCTGGCTAAAAATCCTATTCAC
GTGGAATACGATAGTACGCCCCAGGAAGTGGCCGTCTCGCATGCCTCCGT
CCATTTGGATACAAATCATTCCGGACTCACAGCTCCAGGTCATAGTGAAC
AAACGGTTCACCCAGGTCCAGTGTATACGCAACCAGAGCAACACCCGGAG
CCCCAGATACATCAGATTCATCAAGATCATCACATAATCCATCATGAGCC
TCAGCCAGAGCATGAGCCTCACTTGCATCAAGATCACCTGGAGCATCATG
AGCATCCCTCACTGCAGCCATATCACGTGGAAAAACTTAAAGACCACGAT
CATCATGTCAAACAGGTGGTGGAGAAGCACATACCCATACCATATGCCGT
TCCACAACCTGTGCCCGTGCCTGTCCACGTGGAGCACTACGTGGATCGTC
CGTACCCAGTGGAGACCATTGTCGAACATCCCGTTCCATATCCCGTGGAG
AGGGTGGTGGAGAAAATCGTCGAGAAGCATGTGCCCGTTGAGGTGGAGCG
CATTGTGGAGAAGCCCGTGCATGTGGAGAAGATTGTGGAAAAGTTTGTGG
ACCGACCGATGGCGATTCCGATACATGTCCCCGTGGCCATTCACATGCCC
ATGCCGCCGGGACACTCCTCGCTGTCATTTCCCCACTACTCCCACCCCAA
TTCCCTAACGCCCTGGACCCACTCCGTTGCCCACATTCCACCGAAAGTGT
TGCAAAACTATTACACACGGATGCTGAAGAAGTTGCTGCCACAGCTCACC
GCCAAAACCCCTATCCCCCAATCTCCCAAAGCGGTCAAGTTGAGCAAGCC
GGTGGCGGCCATCAAGCAACCAGTGAAACCCGTGAGGGGAGAGGCGCCCA
AGGTCGCCACCTTCAGTTTGGCTGACATGAAATTCGACCTTCGACCTCCA
CCGCCGCCACAGGGCTCACCTTGGTTGCAGGGATCCCGATATATCTATAA
TACCCTTCCCGCCGATTTGGCCACCGCCGCCGCCTCGACTCCCACCAAAA
TGGTTAAGTCCTACATTGGCGTCGTTCCAGCTCCAACATCTGCGAACTCA
GACGTTGGGGATTCCCCGCTCACCAGCGAGTTCGATGAGTTCCAGCGATG
GCGCAACGGACACTCCCTGAAGCGCAGTCCCGACTTCGGGCGCAATCTTC
AGCTGGAGTATGGATTTAAGCCCCCTTTGGTGCCGTCCATGGAGATCGAC
GACAAGGGCAATCCCCTCAAGCAAGCCGAACAATCGGAGACCCAGGCAAG
CTTTCTAGACCAT
BO29115.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:42:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6280-RA | 3282 | CG6280-PA | 1..3279 | 17..3295 | 16380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:42:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6280-RA | 3706 | CG6280-RA | 310..3589 | 16..3295 | 16385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:42:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13756789..13758854 | 1230..3295 | 10330 | 100 | Plus |
| 2R | 25286936 | 2R | 13755896..13756734 | 393..1231 | 4180 | 99.9 | Plus |
| 2R | 25286936 | 2R | 13755343..13755568 | 16..241 | 1130 | 100 | Plus |
| 2R | 25286936 | 2R | 13755622..13755775 | 240..393 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:42:28 has no hits.
BO29115.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:57:08 Download gff for
BO29115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6280-RA | 1..3279 | 17..3297 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:34:20 Download gff for
BO29115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6280-RA | 311..3589 | 17..3297 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:40:09 Download gff for
BO29115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6280-RA | 311..3589 | 17..3297 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:40:09 Download gff for
BO29115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13755344..13755568 | 17..241 | 100 | -> | Plus |
| 2R | 13755624..13755775 | 242..393 | 100 | -> | Plus |
| 2R | 13755897..13756734 | 394..1231 | 99 | -> | Plus |
| 2R | 13756791..13758854 | 1232..3297 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:34:20 Download gff for
BO29115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9642849..9643073 | 17..241 | 100 | -> | Plus |
| arm_2R | 9643129..9643280 | 242..393 | 100 | -> | Plus |
| arm_2R | 9643402..9644239 | 394..1231 | 99 | -> | Plus |
| arm_2R | 9644296..9646359 | 1232..3297 | 99 | | Plus |
BO29115.pep Sequence
Translation from 16 to 3313
> BO29115.pep
MWPHRHQRHLLTAAATLCCLLAIIVQPALSDEPPILTSSSTPPSSAAVSA
PGDLPQNLTVEAAATEALSDSSGKELNKQPAEQLIREVIEGPNLADEVRV
DPDLERELKREGEDPIETETETEFVGVPGFLPTALPPKDSDSPTNGHGYI
QFEINDELPVEVARRQRPIEQTVTRSRTETVNEVLSNLFPKGFSDIFRFS
GNTDTSTTTSTTTNKAVVRPTVVDVVSTTEAASTEKQTKPPAPNATYYSY
QTTVTKEYRRELGPGHTEIVVEQIRDPGFRDGSNHISRDELLRINRAAVA
APVLPSVLLQPEGDDNETLVAAESSPIVILGEHDPDLEEGQEINDNQIAE
TRHVGREAYQQRVPVPNFNGIESYANQKGPGQDQEINVHIVHDGPQGKPQ
QAEAKTPKESQSQPAQQALDHFQAHSEQRFQQHHPSQEAPSRQFLKSFNP
IVSGSGDGPLPKGSFHYEVQNPPQRPNPRTPKEGDYAGQFVKPAAQLAYQ
QELSQVIPQEQSKPQQQSELLHTKAISSPAPDVQQYSGYAGPTPVSATPN
SLVFVTLNTPSPPHSSAAPSIAHTPFEPGVQITVNHPAPHNYVAEAHAEP
SQTIIQHAPAPAPKKSTPYTFVEVQKSVNIHNKLITEKDGRLVEQHETIY
PQPYPQNHLSQAPDPSKSYASLAKNPIHVEYDSTPQEVAVSHASVHLDTN
HSGLTAPGHSEQTVHPGPVYTQPEQHPEPQIHQIHQDHHIIHHEPQPEHE
PHLHQDHLEHHEHPSLQPYHVEKLKDHDHHVKQVVEKHIPIPYAVPQPVP
VPVHVEHYVDRPYPVETIVEHPVPYPVERVVEKIVEKHVPVEVERIVEKP
VHVEKIVEKFVDRPMAIPIHVPVAIHMPMPPGHSSLSFPHYSHPNSLTPW
THSVAHIPPKVLQNYYTRMLKKLLPQLTAKTPIPQSPKAVKLSKPVAAIK
QPVKPVRGEAPKVATFSLADMKFDLRPPPPPQGSPWLQGSRYIYNTLPAD
LATAAASTPTKMVKSYIGVVPAPTSANSDVGDSPLTSEFDEFQRWRNGHS
LKRSPDFGRNLQLEYGFKPPLVPSMEIDDKGNPLKQAEQSETQASFLDH
BO29115.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:31:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6280-PA | 1093 | CG6280-PA | 1..1093 | 1..1093 | 5803 | 100 | Plus |
| CG16886-PA | 373 | CG16886-PA | 67..360 | 585..906 | 254 | 29.5 | Plus |
| CG16886-PB | 358 | CG16886-PB | 67..350 | 585..894 | 250 | 29.7 | Plus |
| CG11584-PB | 662 | CG11584-PB | 57..648 | 353..939 | 188 | 21.7 | Plus |
| CG13138-PC | 549 | CG13138-PC | 122..279 | 726..880 | 176 | 34.5 | Plus |
