BO29116.complete Sequence
987 bp assembled on 2011-08-26
> BO29116.complete
GAAGTTATCAGTCGACATGAGAGTACCCACCATGCTGTCGGACATCGACC
AACTGCCCACGCTCCAGGTGGGCGACTACACGCTCCAGTTCGAGTTGGGC
GAGCCGACTGCCCAGGGCAAGGAGGTGGCCATCAAGGAGCTGCGCGAAAC
ACCCGAGCGCCAGAAGGAGGCCTCCAAGGAGCTGGCCCGTCTTCTAGAAG
CGGAGACGGACTTGCTGTACCCCAAGGGAAACGAGGAGTGGCTGATCAGA
TACCTGCGGCCCTGCAAGTATTACCCGGAAAGTGCCCGTGATCTGATTAA
GCGGTACTACGCCTTCAAGGTGAAGCACGCGGATGTGTACACCGACCTGA
AGCCATCGAACGAGGCCAACATCTTCAAGCACAACATCCTTACCGTCTTC
CCCAACCGAGATCAACTGGGTCGTCGCATTTTGGTCCTCGAACTGGGCAA
GCGCTGGAAGCACAAGCAGGTCACCCTCGATGAGGTGTTCAAGGGAGCTG
TGCTCTTCCTGGAGGCGGCCATGCTGGAGCCAGAAACACAGATCTGCGGA
GCCGTTGTGATCTTCGACATGGATGGCCTCAGTCTCCAGCAAACGTGGCA
GTTTACGCCTCCGTTCGCCAAGCGCATTGTGGACTGGCTTCAGGACTCGG
TGCCGCTCCGGATCAAGGCCATTCACATCGTGAACCAGCCGAAGATTTTC
CAGGTGGTCTTTGCCCTGTTCAAGCCCTTCCTCAAGGAGAAGCTGCGCAG
CAGGATCATCTTCCATGGCACCGATCGCGAGTCCCTGCACAAATACATGT
CGCCCAAGTGCCTGCCAGCCGCATACGGAGGATTCCGGGAGGCCAGCCGC
ATCGACAGCGACCAGTGGTACCAGCTGCTGCTCAAGTGCGACACCGAGTT
CGACACCATCAACTCGTACGGCTACAAGAAGAAGGCCAAGCTTTCTAGAC
CAATTTGTTGGGCGGCGGGGGAGGGGGGGGAGGGGGT
BO29116.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:13:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10237-RE | 921 | CG10237-PE | 1..918 | 17..934 | 4575 | 99.9 | Plus |
| CG10237-RC | 921 | CG10237-PC | 1..918 | 17..934 | 4575 | 99.9 | Plus |
| CG10237-RB | 975 | CG10237-PB | 59..972 | 21..934 | 4555 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:13:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10237-RE | 2011 | CG10237-RE | 795..1712 | 17..934 | 4575 | 99.9 | Plus |
| CG10237-RC | 1418 | CG10237-RC | 202..1119 | 17..934 | 4575 | 99.9 | Plus |
| CG10237-RD | 1720 | CG10237-RD | 508..1421 | 21..934 | 4555 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:13:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19436149..19436633 | 934..450 | 2410 | 99.8 | Minus |
| 2L | 23513712 | 2L | 19437666..19437845 | 200..21 | 900 | 100 | Minus |
| 2L | 23513712 | 2L | 19436810..19436964 | 449..295 | 775 | 100 | Minus |
| 2L | 23513712 | 2L | 19437032..19437128 | 295..199 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:13:06 has no hits.
BO29116.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-26 13:54:13 Download gff for
BO29116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10237-RC | 200..1117 | 17..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:50:45 Download gff for
BO29116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10237-RC | 202..1119 | 17..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:54:34 Download gff for
BO29116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10237-RC | 202..1119 | 17..934 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:54:34 Download gff for
BO29116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19436143..19436633 | 450..941 | 98 | <- | Minus |
| 2L | 19436810..19436963 | 296..449 | 100 | <- | Minus |
| 2L | 19437032..19437126 | 201..295 | 100 | <- | Minus |
| 2L | 19437666..19437847 | 17..200 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:50:45 Download gff for
BO29116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19436143..19436633 | 450..941 | 98 | <- | Minus |
| arm_2L | 19436810..19436963 | 296..449 | 100 | <- | Minus |
| arm_2L | 19437032..19437126 | 201..295 | 100 | <- | Minus |
| arm_2L | 19437666..19437847 | 17..200 | 98 | | Minus |
BO29116.pep Sequence
Translation from 16 to 985
> BO29116.pep
MRVPTMLSDIDQLPTLQVGDYTLQFELGEPTAQGKEVAIKELRETPERQK
EASKELARLLEAETDLLYPKGNEEWLIRYLRPCKYYPESARDLIKRYYAF
KVKHADVYTDLKPSNEANIFKHNILTVFPNRDQLGRRILVLELGKRWKHK
QVTLDEVFKGAVLFLEAAMLEPETQICGAVVIFDMDGLSLQQTWQFTPPF
AKRIVDWLQDSVPLRIKAIHIVNQPKIFQVVFALFKPFLKEKLRSRIIFH
GTDRESLHKYMSPKCLPAAYGGFREASRIDSDQWYQLLLKCDTEFDTINS
YGYKKKAKLSRPICWAAGEGGEG
BO29116.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:58:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10237-PE | 306 | CG10237-PE | 1..306 | 1..306 | 1606 | 100 | Plus |
| CG10237-PC | 306 | CG10237-PC | 1..306 | 1..306 | 1606 | 100 | Plus |
| CG10237-PB | 324 | CG10237-PB | 21..324 | 3..306 | 1596 | 100 | Plus |
| CG10237-PD | 301 | CG10237-PD | 1..301 | 6..306 | 1580 | 100 | Plus |
| CG10237-PA | 301 | CG10237-PA | 1..301 | 6..306 | 1580 | 100 | Plus |
