BO29117.complete Sequence
469 bp assembled on 2011-08-26
GenBank Submission: KX798811
> BO29117.complete
GAAGTTATCAGTCGACATGCGTACCCTTATCCTTGTTACTCTTGTTGCCC
TGGTCGCAGTGGCCTCCGCCCAAGGACCTGGTCCTTGGGGTCCCGGTGGA
CCTGGTGGACCTGGTGGACCAGGTCGTGGTCGCGGAGGACCAGGACGTGG
ACCTGGCGGACCAGGTGGCCCAGGAGGTCGCGGACCTGGAGGACCTGGAG
GACCAGGAGGCCCAGGAGGCCCAGGAGGACCAGGAGGACCAGGAGGCCCA
GGAGGACCAGGATGCCCAGGAGGACCAGGTGGACCAGGAGGCCCCAAACC
ATGGGGACCTCCATCCAACCAAACCACATCCACGACAACTGAGGCCTCAA
CAAGCACTTCCACCACGACAGCTTCGTCCACTACAGTGTCCTCCACTACA
GAGTCCTCTACGGAATCCTCGACGGAATCATCCACAGCATCCTCCACAGA
AGCAAGCTTTCTAGACCAT
BO29117.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:13:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lcs-RA | 438 | CG12794-PA | 1..435 | 17..451 | 2175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:13:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lcs-RA | 590 | CG12794-RA | 33..471 | 13..451 | 2180 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:13:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21396846..21397284 | 451..13 | 2180 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:13:25 has no hits.
BO29117.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-26 13:54:14 Download gff for
BO29117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lcs-RA | 20..454 | 17..453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:50:58 Download gff for
BO29117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lcs-RA | 20..454 | 17..453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:54:44 Download gff for
BO29117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lcs-RA | 37..471 | 17..453 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:54:44 Download gff for
BO29117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21396844..21397280 | 17..453 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:50:58 Download gff for
BO29117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21267871..21268307 | 17..453 | 99 | | Minus |
BO29117.pep Sequence
Translation from 16 to 469
> BO29117.pep
MRTLILVTLVALVAVASAQGPGPWGPGGPGGPGGPGRGRGGPGRGPGGPG
GPGGRGPGGPGGPGGPGGPGGPGGPGGPGGPGCPGGPGGPGGPKPWGPPS
NQTTSTTTEASTSTSTTTASSTTVSSTTESSTESSTESSTASSTEASFLD
H
BO29117.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:58:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lcs-PA | 145 | CG12794-PA | 1..145 | 1..145 | 805 | 100 | Plus |
| CG10918-PA | 183 | CG10918-PA | 1..162 | 1..147 | 358 | 54.6 | Plus |
| Mur82C-PB | 578 | CG12586-PB | 406..476 | 22..93 | 339 | 84.9 | Plus |
| Mur82C-PB | 578 | CG12586-PB | 401..485 | 23..107 | 331 | 72.4 | Plus |
| Mur82C-PB | 578 | CG12586-PB | 390..473 | 16..98 | 315 | 72.7 | Plus |
| Mur82C-PB | 578 | CG12586-PB | 403..477 | 14..88 | 312 | 77.9 | Plus |
| Mur82C-PB | 578 | CG12586-PB | 415..478 | 20..83 | 300 | 83.6 | Plus |
| CG13947-PA | 119 | CG13947-PA | 1..117 | 1..135 | 282 | 55.1 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 464..558 | 21..102 | 240 | 57.9 | Plus |
