BO29119.complete Sequence
1402 bp assembled on 2011-08-26
GenBank Submission: KX794225
> BO29119.complete
GAAGTTATCAGTCGACATGAGCTCCATGGACTGCGCCACGTTCCCAATGC
ATCCTAAAATGGACGAGCAACTGGCCCGAACCTTCGTCATCAACGAGGAG
GAGGAGGAGAAGCACATTCAGAAGGTGCAGAACGCCTTCCTTTACTATGG
GCCATATGCGTGTCAGCGGCTAAAGCGCTCCATGGATTACCTGAACAGCC
TGTCTGGCGAGGACCAAATCATGCTAGCCAAGTACCGAGGGCATCTGGAG
TGCGTGCGCACGTGCATCGATCGCAACCAGGCGGTTATCCGGGAAATATT
GCGCGGGCGTGTCCTCTATCCGACGGATGAGGCGACTGGTGATCCCTCGG
AGTTTGACGAGCCGCCGCCAAATGTGCGGCACGGTGACATGGACCAGATT
GATATTCCATTCGATGAAGCTGACGTTGAACCTCTAAAAATTTTAAAGGC
CCAGTCGACGTTGAAGTTGATTGCGCGCGACTGGAGCACTGAAGGAGCCT
TAGAACGGGAGCAATCGTATAAACCGATCATCGACAGCATCGTTGCGTAC
TTCAAGCACAGCGATTTCGAGCTGAAGGATATAAAGATCCTAGTGCCGGG
AGCGGGGTTGGGACGGCTCACCTACGAGCTTGCCTGCTTGGGGTACTCGT
GCGAGGGCAACGAGTTTTCCTACTTCATGCTGATCGCCTCCAATTTTGTC
CTCAACCTCTGCGACAACGAGAACAAGTACGTGTTATATCCGTGGGTGCA
CCAGTATGTGAATAACTTAAGGCGTGAGGATCAGGTGGCCCCCGTTCGTT
TCCCAGACGTCTGCCCGCTTAAAAATCCACCCAAGGGCCATTTTGAAATA
GCAGCTGGCGACTTTCTGGAGGTCTACAAGACGCCGAACGCCTACAACTG
CGTGGCTACGTGCTTCTTCATCGATTGTGCCAATAATGTTATTGACTTCA
TACGCACAATTTACAAAATCCTCGTGCCTGGTGGCATTTGGGTGAATCTC
GGGCCGCTGCTGTACCATTTTAGCGACGTCAGCGGGCAAAACAGCATCGA
GCCGGCTTTCGAGGACCTTTGCATTATCATGGAAAGCGTAGGATTCGTTA
TCGAGAAATCACGCACCGGCATCCGTACCAAGTACGCACAGAACCCGTCT
TCAATGAAACAGAGCGAGTACCAGAGTCTTTTCTGGGTCTGCCGCAAGCC
GGATCTATTTGAGGAGCAGCGGGGCAAACGCAAGGCCTCCAGGGAGCCAC
ACGATCTTATTGTGCGCGAGGACAGCGAGGAGGAGGGGGAGCAACAGCCG
GAACGAAATGAAACGGAAGAAAAACAGCAACTGAAACCGCTGGCCACAGC
CAACTGCGAGACTGAGATAAAGGAGCAGCCATCGGCAAGCTTTCTAGACC
AT
BO29119.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:27:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11596-RC | 1371 | CG11596-PC | 1..1368 | 17..1384 | 6840 | 100 | Plus |
| CG11596-RE | 1206 | CG11596-PE | 1..1203 | 182..1384 | 6015 | 100 | Plus |
| CG11596-RD | 1206 | CG11596-PD | 1..1203 | 182..1384 | 6015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:27:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11596-RC | 1791 | CG11596-RC | 104..1471 | 17..1384 | 6840 | 100 | Plus |
| CG11596-RE | 1765 | CG11596-RE | 211..1445 | 150..1384 | 6175 | 100 | Plus |
| CG11596-RB | 1648 | CG11596-RB | 95..1328 | 151..1384 | 6170 | 100 | Plus |
| CG11596-RE | 1765 | CG11596-RE | 104..212 | 17..125 | 545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:27:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1929773..1930190 | 967..1384 | 2090 | 100 | Plus |
| X | 23542271 | X | 1929454..1929711 | 709..966 | 1290 | 100 | Plus |
| X | 23542271 | X | 1928333..1928580 | 150..397 | 1240 | 100 | Plus |
| X | 23542271 | X | 1928998..1929170 | 395..567 | 865 | 100 | Plus |
| X | 23542271 | X | 1929244..1929384 | 568..708 | 705 | 100 | Plus |
| X | 23542271 | X | 1927786..1927920 | 17..151 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:27:17 has no hits.
BO29119.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-26 13:54:36 Download gff for
BO29119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11596-RC | 107..1474 | 17..1386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:58:40 Download gff for
BO29119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11596-RC | 104..1471 | 17..1386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:01:36 Download gff for
BO29119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11596-RC | 104..1471 | 17..1386 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:01:36 Download gff for
BO29119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1928334..1928580 | 151..397 | 100 | -> | Plus |
| X | 1929001..1929170 | 398..567 | 100 | -> | Plus |
| X | 1929244..1929384 | 568..708 | 100 | -> | Plus |
| X | 1929454..1929711 | 709..966 | 100 | -> | Plus |
| X | 1927786..1927919 | 17..150 | 100 | -> | Plus |
| X | 1929773..1930190 | 967..1386 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:58:40 Download gff for
BO29119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1821819..1821952 | 17..150 | 100 | -> | Plus |
| arm_X | 1822367..1822613 | 151..397 | 100 | -> | Plus |
| arm_X | 1823034..1823203 | 398..567 | 100 | -> | Plus |
| arm_X | 1823277..1823417 | 568..708 | 100 | -> | Plus |
| arm_X | 1823487..1823744 | 709..966 | 100 | -> | Plus |
| arm_X | 1823806..1824223 | 967..1386 | 99 | | Plus |
BO29119.pep Sequence
Translation from 16 to 1402
> BO29119.pep
MSSMDCATFPMHPKMDEQLARTFVINEEEEEKHIQKVQNAFLYYGPYACQ
RLKRSMDYLNSLSGEDQIMLAKYRGHLECVRTCIDRNQAVIREILRGRVL
YPTDEATGDPSEFDEPPPNVRHGDMDQIDIPFDEADVEPLKILKAQSTLK
LIARDWSTEGALEREQSYKPIIDSIVAYFKHSDFELKDIKILVPGAGLGR
LTYELACLGYSCEGNEFSYFMLIASNFVLNLCDNENKYVLYPWVHQYVNN
LRREDQVAPVRFPDVCPLKNPPKGHFEIAAGDFLEVYKTPNAYNCVATCF
FIDCANNVIDFIRTIYKILVPGGIWVNLGPLLYHFSDVSGQNSIEPAFED
LCIIMESVGFVIEKSRTGIRTKYAQNPSSMKQSEYQSLFWVCRKPDLFEE
QRGKRKASREPHDLIVREDSEEEGEQQPERNETEEKQQLKPLATANCETE
IKEQPSASFLDH
BO29119.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:58:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11596-PC | 456 | CG11596-PC | 1..456 | 1..456 | 2431 | 100 | Plus |
| CG11596-PA | 439 | CG11596-PA | 1..439 | 1..456 | 2317 | 96.3 | Plus |
| CG11596-PE | 401 | CG11596-PE | 1..401 | 56..456 | 2136 | 100 | Plus |
| CG11596-PD | 401 | CG11596-PD | 1..401 | 56..456 | 2136 | 100 | Plus |
| CG11596-PB | 401 | CG11596-PB | 1..401 | 56..456 | 2136 | 100 | Plus |
