BO29121.complete Sequence
658 bp assembled on 2011-08-26
GenBank Submission: KX796095
> BO29121.complete
GAAGTTATCAGTCGACATGGCTGATGATGAGGCTAAGAAGGCTAAACAGG
CTGAGATCGAGCGCAAGCGTGCTGAGGTGCGCAAGCGCATGGAGGAAGCC
TCCAAGGCCAAGAAGGCCAAGAAGGGTTTCATGACCCCAGAGAGGAAGAA
GAAACTCAGGTTGCTGCTGCGTAAGAAAGCCGCTGAGGAGCTGAAGAAAG
AACAGGAACGCAAAGCGGCTGAACGTAGACGCATCATCGAAGAACGTTGC
GGCAGTCCCAGGAATCTCAGCGATGCCAGCGAAGATACTATTCAGAGTGT
TTGTAAGGACTACCACAGTAAGATACTGAAACTGGAGTCCGAAAAGTACG
ATTTCGAGTACGATGTAGCCAGAAAGGATTATGAGATCAACGATCTCAAT
GCCCAAGTTAACGATCTTCGCGGCAAGTTCGTCAAGCCAGCCCTGAAGAA
GGTCTCCAAATACGAAAACAAATTCGCCAAGCTGCAGAAGAAGGCCGCTG
AGTTCAACTTCCGCAACCAGCTCAAGGTGGTGAAGAAGAAGGAGTTCACG
CTGGAGGAGGAGGAGAAGGAGAAGAAACCCGACTGGTCCAAGGGCAAGCC
CGGAGATGCCAAGGTGAAGGAGGAGGTTGAGGCCGAAGCTGCAAGCTTTC
TAGACCAT
BO29121.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:28:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wupA-RB | 627 | CG7178-PB | 1..624 | 17..640 | 3120 | 100 | Plus |
| wupA-RA | 627 | CG7178-PA | 1..624 | 17..640 | 2445 | 92.8 | Plus |
| wupA-RJ | 600 | CG7178-PJ | 1..557 | 17..573 | 2110 | 91.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:28:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wupA-RB | 1160 | CG7178-RB | 141..764 | 17..640 | 3120 | 100 | Plus |
| wupA-RA | 1160 | CG7178-RA | 141..764 | 17..640 | 2445 | 92.8 | Plus |
| wupA-RL | 1345 | CG7178-RL | 345..949 | 36..640 | 2350 | 92.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:28:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18106681..18106822 | 571..430 | 710 | 100 | Minus |
| X | 23542271 | X | 18113447..18113577 | 160..30 | 655 | 100 | Minus |
| X | 23542271 | X | 18113258..18113382 | 284..160 | 625 | 100 | Minus |
| X | 23542271 | X | 18111938..18112040 | 385..283 | 515 | 100 | Minus |
| X | 23542271 | X | 18105964..18106034 | 640..570 | 355 | 100 | Minus |
| X | 23542271 | X | 18106888..18106933 | 429..384 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:28:06 has no hits.
BO29121.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-26 13:54:37 Download gff for
BO29121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wupA-RB | 138..761 | 17..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:59:09 Download gff for
BO29121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wupA-RB | 141..764 | 17..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:01:59 Download gff for
BO29121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wupA-RB | 141..764 | 17..642 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:01:59 Download gff for
BO29121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18105962..18106032 | 572..642 | 97 | <- | Minus |
| X | 18106681..18106822 | 430..571 | 100 | <- | Minus |
| X | 18106888..18106931 | 386..429 | 100 | <- | Minus |
| X | 18111938..18112038 | 285..385 | 100 | <- | Minus |
| X | 18113258..18113381 | 161..284 | 100 | <- | Minus |
| X | 18113447..18113575 | 32..160 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:59:09 Download gff for
BO29121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17999995..18000065 | 572..642 | 97 | <- | Minus |
| arm_X | 18000714..18000855 | 430..571 | 100 | <- | Minus |
| arm_X | 18000921..18000964 | 386..429 | 100 | <- | Minus |
| arm_X | 18005971..18006071 | 285..385 | 100 | <- | Minus |
| arm_X | 18007291..18007414 | 161..284 | 100 | <- | Minus |
| arm_X | 18007480..18007608 | 32..160 | 100 | <- | Minus |
BO29121.pep Sequence
Translation from 16 to 658
> BO29121.pep
MADDEAKKAKQAEIERKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLL
LRKKAAEELKKEQERKAAERRRIIEERCGSPRNLSDASEDTIQSVCKDYH
SKILKLESEKYDFEYDVARKDYEINDLNAQVNDLRGKFVKPALKKVSKYE
NKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEEKEKKPDWSKGKPGDAKV
KEEVEAEAASFLDH
BO29121.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:58:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wupA-PB | 208 | CG7178-PB | 1..208 | 1..208 | 1047 | 100 | Plus |
| wupA-PA | 208 | CG7178-PA | 1..208 | 1..208 | 962 | 92.3 | Plus |
| wupA-PF | 208 | CG7178-PF | 1..208 | 1..208 | 950 | 89.4 | Plus |
| wupA-PC | 208 | CG7178-PC | 1..208 | 1..208 | 950 | 89.4 | Plus |
| wupA-PE | 208 | CG7178-PE | 1..208 | 1..208 | 927 | 88.9 | Plus |
