BO29125.complete Sequence
847 bp assembled on 2011-08-26
GenBank Submission: KX797601
> BO29125.complete
GAAGTTATCAGTCGACATGTCATCGGCTATATACCTAGAGAACTATTTAG
ACGGATTGGAAAGTCTGCCAACGGAGCTGGAGAGAAATTTTAAGCTGATG
CGAAAATTAGACGATCGAGCACAAACAGCGATGAAGAGCATCGATAGCCA
TGCCAAGGACTTTATGCGCAAGCTGGGCGAGAACGGGGCCATGAGCGAGG
ATGAGAGGAGGGAGCGCCAGGAGGATATCAAGGCACTGTTCGGAAAGGCC
AAGGAGTACAGCGACGACAAGGTGCAGCTGGCCATTCAGACCTACGAACT
AGTGGACAAGCAGATACGGCGACTGGACAACGATTTAGCACGCTTCGAGG
GTGAGATTCAGGAGAAGGCCTCATCCACGCGTGCCAAATCCGAGGAAGTG
GTGGCCAAGAAAGGTCGCAAAAAAACCAAGGACAGCAAGACGACGGGCAA
AAAGAAAAAGTCCGCATCCTCGGATGAGGAAACTGGGCGCGGCAACAACC
AATCTAACGCCAATTCCAGTGTCAATTCGAGCAGCAATGCCGGGCAAGGT
AGCAAAAAGAAAAAGTCCAAGAAAACCGTCGAGGTTGATGACTCTGAGAA
GGAATCGTGCCACACGGCCGCCACTCATCCCAGCGACGTTATGGACATGC
CCGTCGATCCCAATGAGCCCACATATTGCCTATGCCACCAGGTGTCCTAT
GGAGAGATGATTGGCTGCGACAATCCCGACTGTCCCATCGAGTGGTTTCA
CTTCGCTTGTGTTGGCCTCACCACAAAGCCAAAGGGCAAGTGGTTCTGTC
CCAAGTGCACGCAGGACAGAAAGAAGAAAGCAAGCTTTCTAGACCAT
BO29125.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:28:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9293-RB | 816 | CG9293-PB | 1..813 | 17..829 | 4050 | 99.9 | Plus |
| CG9293-RA | 858 | CG9293-PA | 1..555 | 17..571 | 2775 | 100 | Plus |
| CG9293-RA | 858 | CG9293-PA | 595..855 | 569..829 | 1290 | 99.6 | Plus |
| Ing3-RA | 2061 | CG6632-PA | 1869..2024 | 655..810 | 225 | 76.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:29:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9293-RB | 1002 | CG9293-RB | 100..912 | 17..829 | 4050 | 99.9 | Plus |
| CG9293-RA | 1044 | CG9293-RA | 100..654 | 17..571 | 2775 | 100 | Plus |
| CG9293-RA | 1044 | CG9293-RA | 694..954 | 569..829 | 1290 | 99.6 | Plus |
| Ing3-RA | 2298 | CG6632-RA | 1997..2152 | 655..810 | 225 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:28:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13386757..13387114 | 410..53 | 1790 | 100 | Minus |
| 2L | 23513712 | 2L | 13386099..13386259 | 730..570 | 805 | 100 | Minus |
| 2L | 23513712 | 2L | 13386530..13386690 | 571..411 | 805 | 100 | Minus |
| 2L | 23513712 | 2L | 13385938..13386036 | 829..731 | 480 | 99 | Minus |
| X | 23542271 | X | 18650864..18651019 | 810..655 | 225 | 76.3 | Minus |
| 2L | 23513712 | 2L | 13387176..13387213 | 54..17 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:28:58 has no hits.
BO29125.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-26 13:54:39 Download gff for
BO29125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9293-RB | 87..889 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:59:36 Download gff for
BO29125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9293-RB | 100..902 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:02:26 Download gff for
BO29125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9293-RB | 100..902 | 17..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:02:26 Download gff for
BO29125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13386099..13386257 | 572..730 | 100 | <- | Minus |
| 2L | 13386530..13386690 | 411..571 | 100 | <- | Minus |
| 2L | 13386757..13387113 | 54..410 | 100 | <- | Minus |
| 2L | 13387177..13387213 | 17..53 | 100 | | Minus |
| 2L | 13385948..13386036 | 731..819 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:59:36 Download gff for
BO29125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13385948..13386036 | 731..819 | 98 | <- | Minus |
| arm_2L | 13386099..13386257 | 572..730 | 100 | <- | Minus |
| arm_2L | 13386530..13386690 | 411..571 | 100 | <- | Minus |
| arm_2L | 13386757..13387113 | 54..410 | 100 | <- | Minus |
| arm_2L | 13387177..13387213 | 17..53 | 100 | | Minus |
BO29125.pep Sequence
Translation from 16 to 847
> BO29125.pep
MSSAIYLENYLDGLESLPTELERNFKLMRKLDDRAQTAMKSIDSHAKDFM
RKLGENGAMSEDERRERQEDIKALFGKAKEYSDDKVQLAIQTYELVDKQI
RRLDNDLARFEGEIQEKASSTRAKSEEVVAKKGRKKTKDSKTTGKKKKSA
SSDEETGRGNNQSNANSSVNSSSNAGQGSKKKKSKKTVEVDDSEKESCHT
AATHPSDVMDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCPIEWFHFACVG
LTTKPKGKWFCPKCTQDRKKKASFLDH
BO29125.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:58:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9293-PB | 271 | CG9293-PB | 1..271 | 1..271 | 1422 | 100 | Plus |
| CG9293-PA | 285 | CG9293-PA | 1..285 | 1..271 | 1397 | 95.1 | Plus |
| CG7379-PA | 433 | CG7379-PA | 223..419 | 112..275 | 292 | 34.8 | Plus |
| Ing3-PA | 686 | CG6632-PA | 624..683 | 214..273 | 257 | 61.7 | Plus |
| Ing3-PA | 686 | CG6632-PA | 2..169 | 5..179 | 198 | 30.9 | Plus |
| MESR4-PD | 2151 | CG4903-PD | 2092..2136 | 220..264 | 163 | 55.6 | Plus |
