Clone BO29149 Report

Search the DGRC for BO29149

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:291
Well:49
Vector:pDNR-Dual
Associated Gene/Transcriptsw-RE
Protein status:BO29149.pep: Imported from assembly
Sequenced Size:1960

Clone Sequence Records

BO29149.complete Sequence

1960 bp assembled on 2011-09-19

GenBank Submission: KX798182

> BO29149.complete
GAAGTTATCAGTCGACATGGATCGCAAGGCTGAGCTGGAACGCAAGAAGG
CCAAGTTGGCCGCCCTGCGCGAGGAGAAGGATCGCCGGCGTCGCGAGAAG
GAGATCAAGGACATGGAGGAGGCGGCCGGTCGCATTGGCGGCGGAGCAGG
CATCGACAAGGATCAGCGCAAGGATCTCGACGAAATGCTGTCATCGCTGG
GCGTGGCCCCCGTCTCCGAGGTCCTTTCCTCACTCTCCTCCGTCAACTCG
ATGACTTCGGACAACTCGAACACACAGACCCCCGACGCCAGCCTCCAAGC
CACTGTCAATGGCCAGAGCGGCGGAAAGAAACAGCCCCTCAACCTAAGCG
TCTACAATGTGCAGGCTACGAACATTCCACCAAAAGAGACACTGGTCTAC
ACAAAGCAGACCCAGACGACCAGTACCGGAGGCGGAAACGGCGATGCTCA
TGCTACGGATTATTATGATGAATACAATCTTAATCCGGGTTTAGAGTGGG
AGGATGAATTCACAGACGACGAAGAGAGCTCACTGCAGAACCTGGGCAAC
GGATTCACCTCCAAGCTGCCACCGGGCTATCTCACCCACGGCCTGCCCAC
CGTTAAGGACGTCGCCCCGGCCATCACACCACTCGAGATCAAGAAGGAGA
CTGAAGTGAAGAAGGAGGTCAACGAGCTGTCCGAGGAGCAGAAGCAGATG
ATCATACTGTCGGAGAACTTCCAGCGGTTCGTGGTGCGTGCCGGCCGCGT
CATCGAACGGGCCCTCTCGGAGAATGTGGACATATACACGGACTACATCG
GCGGCGGCGACAGCGAGGAGGCGAACGACGAGCGATCGCATGCGCGGCTC
TCGCTGAACCGCGTCTTCTACGACGAGCGCTGGTCGAAGAACCGCTGCAT
CACCAGCATGGACTGGTCCACCCACTTCCCCGAGCTGGTGGTGGGCTCGT
ACCACAACAACGAGGAGAGTCCGAACGAGCCGGACGGCGTGGTGATGGTG
TGGAACACCAAGTTCAAGAAGAGCACGCCCGAGGACGTCTTCCACTGCCA
GAGCGCGGTGATGTCCACCTGCTTTGCCAAGTTCAATCCCAACCTGATCC
TCGGCGGCACCTATTCGGGCCAGATTGTGCTGTGGGACAATCGCGTGCAG
AAGCGCACGCCCATACAGCGCACGCCCCTCAGTGCCGCGGCGCACACGCA
TCCCGTCTACTGCCTCCAAATGGTGGGCACCCAGAATGCGCACAACGTCA
TCTCCATATCCTCGGACGGCAAGCTGTGCTCCTGGTCGCTGGACATGCTG
TCGCAACCACAGGACACGCTGGAGCTGCAGCAGCGCCAGTCGAAGGCCAT
TGCCATTACATCGATGGCCTTCCCGGCCAACGAGATCAATAGCCTGGTGA
TGGGCAGTGAGGACGGCTACGTCTACTCCGCCTCGCGCCACGGCCTGCGC
TCCGGGGTCAACGAGGTTTACGAACGCCATCTTGGCCCTATCACTGGCAT
ATCCACGCACTACAACCAGCTGTCGCCGGACTTTGGCCACCTCTTCCTAA
CCTCGTCCATTGACTGGACCATCAAGCTCTGGTCGCTAAAGGACACAAAG
CCGCTGTACTCCTTTGAGGACAACTCCGACTACGTGATGGACGTCGCCTG
GTCGCCCGTGCATCCCGCACTCTTCGCCGCCGTCGACGGCAGCGGCCGCC
TGGATCTGTGGAACCTCAACCAAGACACGGAGGTGCCGACCGCCTCGATT
GTCGTGGCGGGAGCACCAGCCCTTAACCGCGTCTCTTGGACCCCATCCGG
TCTGCACGTGTGCATCGGCGACGAGGCCGGCAAGCTGTACGTGTACGACG
TGGCCGAGAACCTGGCGCAGCCATCGCGCGACGAATGGTCGCGGTTCAAC
ACCCATCTTAGCGAGATCAAGATGAACCAGAGCGATGAGGTCGCAAGCTT
TCTAGACCAT

BO29149.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:55:49
Subject Length Description Subject Range Query Range Score Percent Strand
sw-RE 1929 CG18000-PE 1..1926 17..1942 9630 100 Plus
sw-RD 1932 CG18000-PD 1..1929 17..1942 9565 99.8 Plus
sw-RL 1932 CG18000-PL 1..1929 17..1942 9565 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:50
Subject Length Description Subject Range Query Range Score Percent Strand
sw-RE 3070 CG18000-RE 384..2309 17..1942 9630 100 Plus
sw-RD 2889 CG18000-RD 200..2128 17..1942 9565 99.8 Plus
sw-RL 3032 CG18000-RL 343..2271 17..1942 9565 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20229139..20230063 1592..668 4625 100 Minus
X 23542271 X 20205922..20206846 1592..668 4610 99.9 Minus
X 23542271 X 20174931..20175855 1592..668 4595 99.8 Minus
X 23542271 X 20190482..20191406 1592..668 4595 99.8 Minus
X 23542271 X 20198198..20199122 1592..668 4595 99.8 Minus
X 23542271 X 20182758..20183682 1592..668 4580 99.7 Minus
X 23542271 X 20213615..20214507 1560..668 4450 99.9 Minus
X 23542271 X 20221297..20222189 1560..668 4450 99.9 Minus
X 23542271 X 20182341..20182693 1942..1590 1765 100 Minus
X 23542271 X 20228722..20229074 1942..1590 1765 100 Minus
X 23542271 X 20220882..20221226 1942..1598 1680 99.1 Minus
X 23542271 X 20205563..20205857 1884..1590 1430 99 Minus
X 23542271 X 20190123..20190417 1884..1590 1430 99 Minus
X 23542271 X 20197839..20198133 1884..1590 1430 99 Minus
X 23542271 X 20213258..20213544 1884..1598 1390 99 Minus
X 23542271 X 20235508..20235663 172..17 780 100 Minus
X 23542271 X 20176238..20176392 668..514 775 100 Minus
X 23542271 X 20184060..20184214 668..514 775 100 Minus
X 23542271 X 20191789..20191943 668..514 775 100 Minus
X 23542271 X 20199505..20199659 668..514 775 100 Minus
X 23542271 X 20207229..20207383 668..514 775 100 Minus
X 23542271 X 20214885..20215039 668..514 775 100 Minus
X 23542271 X 20222567..20222721 668..514 775 100 Minus
X 23542271 X 20230441..20230595 668..514 775 100 Minus
X 23542271 X 20235288..20235434 318..172 735 100 Minus
X 23542271 X 20234775..20234904 446..317 650 100 Minus
X 23542271 X 20174604..20174768 1930..1760 640 93 Minus
X 23542271 X 20178270..20178399 446..317 635 99.2 Minus
X 23542271 X 20186145..20186274 446..317 635 99.2 Minus
X 23542271 X 20193875..20194004 446..317 635 99.2 Minus
X 23542271 X 20201591..20201720 446..317 635 99.2 Minus
X 23542271 X 20209261..20209390 446..317 635 99.2 Minus
X 23542271 X 20216917..20217046 446..317 635 99.2 Minus
X 23542271 X 20224652..20224781 446..317 635 99.2 Minus
X 23542271 X 20232117..20232165 515..467 245 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:55:47 has no hits.

BO29149.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:45 Download gff for BO29149.complete
Subject Subject Range Query Range Percent Splice Strand
sw-RJ 384..812 17..446 99 -> Plus
sw-RJ 877..2372 447..1944 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:40 Download gff for BO29149.complete
Subject Subject Range Query Range Percent Splice Strand
sw-RE 384..2309 17..1944 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:30 Download gff for BO29149.complete
Subject Subject Range Query Range Percent Splice Strand
sw-RE 384..2309 17..1944 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:30 Download gff for BO29149.complete
Subject Subject Range Query Range Percent Splice Strand
X 20235509..20235663 17..171 100   Minus
X 20228720..20229072 1592..1944 99 <- Minus
X 20229140..20230062 669..1591 100 <- Minus
X 20230441..20230593 516..668 100 <- Minus
X 20232117..20232164 468..515 100 <- Minus
X 20233423..20233443 447..467 100 <- Minus
X 20234775..20234902 319..446 100 <- Minus
X 20235288..20235434 172..318 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:40 Download gff for BO29149.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20099794..20100146 1592..1944 99 <- Minus
arm_X 20100214..20101136 669..1591 100 <- Minus
arm_X 20101515..20101667 516..668 100 <- Minus
arm_X 20103191..20103238 468..515 100 <- Minus
arm_X 20104497..20104517 447..467 100 <- Minus
arm_X 20105849..20105976 319..446 100 <- Minus
arm_X 20106362..20106508 172..318 100 <- Minus
arm_X 20106583..20106737 17..171 100   Minus

BO29149.pep Sequence

Translation from 16 to 1960

> BO29149.pep
MDRKAELERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGAGIDKDQ
RKDLDEMLSSLGVAPVSEVLSSLSSVNSMTSDNSNTQTPDASLQATVNGQ
SGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDAHATDYY
DEYNLNPGLEWEDEFTDDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVA
PAITPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIERAL
SENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDW
STHFPELVVGSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMS
TCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCL
QMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSM
AFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYN
QLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHP
ALFAAVDGSGRLDLWNLNQDTEVPTASIVVAGAPALNRVSWTPSGLHVCI
GDEAGKLYVYDVAENLAQPSRDEWSRFNTHLSEIKMNQSDEVASFLDH

BO29149.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
sw-PE 642 CG18000-PE 1..642 1..642 3363 100 Plus
sw-PD 643 CG18000-PD 1..643 1..642 3351 99.8 Plus
sw-PL 643 CG18000-PL 1..643 1..642 3351 99.8 Plus
sw-PM 643 CG18000-PM 1..643 1..642 3351 99.8 Plus
sw-PF 650 CG18000-PF 1..650 1..642 3344 98.8 Plus