BO29153.complete Sequence
1717 bp assembled on 2011-09-20
GenBank Submission: KX795279
> BO29153.complete
GAAGTTATCAGTCGACATGTCTGTGACCCAGACGAAACAAATCAAGTTCT
ACAACCCATCGAGTTCCGCTAGCTCCGACAGCGATGACCGTTCACTCTCG
GATGTCACAGAGCAACTCTATGTGGATCCGTATGCCGACCTAAGCAATGG
CTTGCCCGGGGATCTCAACTGCTGTCCGGCCTCGCCCACCACAGTGCCTG
CTAAAGCATCGTTGGATTCGCCTCTTAAACGTTCCGGTAGGAGACAGCGA
ACCACATCCATTGGCAACCAGACCACCACAGCGAATCCGTCCGAATGCAT
CATACGCGCAAATAACCGCACGATCTACACGGCCGGACGACCGCCGTGGT
ACAATTGTGCTGGGCAACAGGTGGAGCCCTTCGTCATAGGAATCTGCGGC
GGTAGTGCCTCTGGCAAGACCACAGTGGCTGAGAAAATCATCGAAAGCCT
AGACGTTCCATGGGTAACACTGTTGTCCATGGACTGTTTCTACAAGATCC
TTAATGAGAAACAGCATGAGCAGGCCCTGATCAACGAATATAACTTCGAT
CACCCGGATGCCTTCGACATCGAGCTGCTGCTGGACGTGCTCACCAAGCT
GAAGGAGGGCCGAAAGGTGGAAGTTCCTGTCTATAATTTTGTGACACATG
GTCGTGAGAGCCAAACGAAAACCATGTACGGGGCCAATGTGATCATCTTC
GAGGGTATTCTTACCTTTCATAGTCCTGAAGTACTTAAATTGCTAGACAT
GAAGATATTTGTGGACACAGATCCCGATATTCGTCTGGCCAGGCGGTTAA
GAAGGGACATCTCTCAGCGCGGACGAGACCTCAAGGGCGTGCTGAAGCAA
TACCTTAATATGGTTAAGCCCTCCTATTGCAATTACATAGCTCCAACAAT
GGCCCATGCAGATATCATTGTTCCTCGTGGAGGCGACAACAAGGTGGCCA
TCCATCTCATTGTTCAGCACGTGCACACACAGCTGCAACTGCGCGGATTT
AAGCTGCGCGAAACTCTGGCCAACTCCTACAAGGACCAGCCAATGCCACA
TTCTCTGCACTTGCTGCATCCCACGCCCCAAATAAAGGGCCTGCACACGT
TCATCCGTTGCCGAAATACGTCCCGCGATGAGTTTATTTTTTACTCAAAG
CGCCTGATACGGCTAGTCATTGAATATGCGCTAAGCTTATTTCCCTTTAA
GAAAACAACAGTGGAGACTCCACAAGGTGTCCTTTACGAGGGCAAGCGTA
TGGAATCGCGAAAAATATGCGGCGTCTCAATTCTCCGAGCTGGTGAAACA
ATGGAACAAGCCGTTTGTGATGTGTGCAAGGACATTCGCATCGGAAAGAT
CCTCATCCAGACCAATCTTAAGACCGGCGAGCCGGAGCTTTACTACCTGA
GGCTGCCTAAAGACATAAAAGACTACAAGGTGATACTAATGGATGCCACC
GTGGCCACAGGAGCAGCGGCCATGATGGCCATTCGGGTGCTGCTGGATCA
CGATGTACCCGAGGACAACATTATCTTGGCCTCGCTTTTGATGGCTGAGA
TCGGTGTGCACTCCATTGCCTATGCCTTCCCAAAGGTGAAAATTGTTACT
TCCGCTCTGGATCCGGAGATTAATAGTAAGTTTTATGTTATACCCGGCAT
TGGTAACTTTGGCGATCGCTACTTTGGCACGGAACCCTCTGATGAGTACG
CAAGCTTTCTAGACCAT
BO29153.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:17:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k01209-RA | 1686 | CG4798-PA | 1..1683 | 17..1699 | 8415 | 100 | Plus |
l(2)k01209-RD | 1881 | CG4798-PD | 257..1878 | 78..1699 | 8095 | 99.9 | Plus |
l(2)k01209-RC | 1881 | CG4798-PC | 257..1878 | 78..1699 | 8095 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:17:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k01209-RA | 1881 | CG4798-RA | 97..1785 | 11..1699 | 8430 | 99.9 | Plus |
l(2)k01209-RD | 2284 | CG4798-RD | 567..2188 | 78..1699 | 8095 | 99.9 | Plus |
l(2)k01209-RC | 2380 | CG4798-RC | 663..2284 | 78..1699 | 8095 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:17:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17424818..17425416 | 991..1589 | 2995 | 100 | Plus |
2R | 25286936 | 2R | 17423653..17423964 | 79..390 | 1560 | 100 | Plus |
2R | 25286936 | 2R | 17424196..17424506 | 495..805 | 1555 | 100 | Plus |
2R | 25286936 | 2R | 17424571..17424759 | 803..991 | 945 | 100 | Plus |
2R | 25286936 | 2R | 17425468..17425583 | 1584..1699 | 580 | 100 | Plus |
2R | 25286936 | 2R | 17424026..17424134 | 388..496 | 545 | 100 | Plus |
2R | 25286936 | 2R | 17420503..17420573 | 11..81 | 340 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:17:21 has no hits.
BO29153.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:55:42 Download gff for
BO29153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k01209-RD | 77..140 | 17..80 | 100 | -- | Plus |
l(2)k01209-RD | 910..2529 | 81..1701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:35 Download gff for
BO29153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k01209-RA | 103..1785 | 17..1701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:58 Download gff for
BO29153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k01209-RA | 103..1785 | 17..1701 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:58 Download gff for
BO29153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17423656..17423963 | 82..389 | 100 | -> | Plus |
2R | 17424198..17424505 | 497..804 | 100 | -> | Plus |
2R | 17424573..17424759 | 805..991 | 100 | -> | Plus |
2R | 17420509..17420573 | 17..81 | 100 | -> | Plus |
2R | 17424028..17424134 | 390..496 | 100 | -> | Plus |
2R | 17424819..17425412 | 992..1585 | 100 | -> | Plus |
2R | 17425470..17425583 | 1586..1701 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:35 Download gff for
BO29153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13308014..13308078 | 17..81 | 100 | -> | Plus |
arm_2R | 13311161..13311468 | 82..389 | 100 | -> | Plus |
arm_2R | 13311533..13311639 | 390..496 | 100 | -> | Plus |
arm_2R | 13311703..13312010 | 497..804 | 100 | -> | Plus |
arm_2R | 13312078..13312264 | 805..991 | 100 | -> | Plus |
arm_2R | 13312324..13312917 | 992..1585 | 100 | -> | Plus |
arm_2R | 13312975..13313088 | 1586..1701 | 98 | | Plus |
BO29153.pep Sequence
Translation from 16 to 1717
> BO29153.pep
MSVTQTKQIKFYNPSSSASSDSDDRSLSDVTEQLYVDPYADLSNGLPGDL
NCCPASPTTVPAKASLDSPLKRSGRRQRTTSIGNQTTTANPSECIIRANN
RTIYTAGRPPWYNCAGQQVEPFVIGICGGSASGKTTVAEKIIESLDVPWV
TLLSMDCFYKILNEKQHEQALINEYNFDHPDAFDIELLLDVLTKLKEGRK
VEVPVYNFVTHGRESQTKTMYGANVIIFEGILTFHSPEVLKLLDMKIFVD
TDPDIRLARRLRRDISQRGRDLKGVLKQYLNMVKPSYCNYIAPTMAHADI
IVPRGGDNKVAIHLIVQHVHTQLQLRGFKLRETLANSYKDQPMPHSLHLL
HPTPQIKGLHTFIRCRNTSRDEFIFYSKRLIRLVIEYALSLFPFKKTTVE
TPQGVLYEGKRMESRKICGVSILRAGETMEQAVCDVCKDIRIGKILIQTN
LKTGEPELYYLRLPKDIKDYKVILMDATVATGAAAMMAIRVLLDHDVPED
NIILASLLMAEIGVHSIAYAFPKVKIVTSALDPEINSKFYVIPGIGNFGD
RYFGTEPSDEYASFLDH
BO29153.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:12:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k01209-PA | 561 | CG4798-PA | 1..561 | 1..561 | 2916 | 100 | Plus |
l(2)k01209-PD | 626 | CG4798-PD | 72..626 | 7..561 | 2810 | 97.5 | Plus |
l(2)k01209-PC | 626 | CG4798-PC | 72..626 | 7..561 | 2810 | 97.5 | Plus |
l(2)k01209-PB | 626 | CG4798-PB | 72..626 | 7..561 | 2810 | 97.5 | Plus |
CG6364-PB | 305 | CG6364-PB | 27..240 | 121..326 | 492 | 46.7 | Plus |