BO29158.complete Sequence
2764 bp assembled on 2011-09-20
GenBank Submission: KX794113
> BO29158.complete
GAAGTTATCAGTCGACATGGATCGCCTTTCCATTCTGCTCTTGGTTCTTG
GATTCTCCCGGATCCAGGCTCTTTTCTGTGGTGGGTCAATGGCGAAAGAG
TGCGTACAGCGAAACCGTTGCCGTATTGGTACCGAAACGGGAAGACCAAT
CATAGATTTTAGAGGACTTAATAACGGTAATCAGGGATGTGAATCTGGCC
AAACCTGCTGCCCGAAAACGGAAATATTACAATATCCAGTACAGGCTGAC
AATCAACCGCTACCTACTGAATGTGGCCACGTGAACCGTATAGGAGTGGG
CTTCACCATAACTAACGCGAGAGACATCGCACAGAAAGGCGAACTGCCAT
GGATGGTGGCCCTGCTCGATTCCAGAAGCCGTCTACCGTTAGGCGGCGGC
TCCCTAATTACGCGGGATGTGGTGCTTACATCATCTACGAAAACTTTGGA
AGTTCCTGAGAAATATCTTATTGTGAGGGCTGGCGAATGGGACTTTGAAA
GCATCACCGAGGAGCGAGCACATGAGGACGTTGCGATCAGGAAGATCGTA
CGACATACCAATCTCAGTGTCGAAAATGGTGCCAATAATGCGGCCCTTCT
GTTCCTCGCTAGACCGCTAAAACTAGACCATCACATAGGTCTCATTTGTT
TGCCGCCGCCGAATCGAAACTTTATCCATAATCGCTGCATCGTCAGTGGC
TGGGGCAAAAAAACAGCCTTGGACAACAGTTACATGAATATCCTGAAAAA
GATCGAGTTGCCATTGGTGGACAGATCTGTGTGTCAAACGAAACTGCAAG
GACCCTACGGCAAAGACTTCATTCTCGATAACAGCCTAATATGTGCCGGC
GGAGAACCTGGCAAGGATACGTGCAAAGGCGATGGAGGTGCCCCACTTGC
CTGCCCACTGCAAAGCGATCCTAACCGGTACGAACTGTTGGGAATCGTAA
ACTTTGGATTCGGATGTGGAGGGCCACTTCCTGCTGCCTACACTGATGTT
TCCCAAATTCGAAGCTGGATTGATAATTGTATCCAAGCGGAAGCAGTCCA
CTATTCTCCTCAGTTGGGAAATGTAGGCCAATCACCTGCTCCACTCGATC
GCTATATACCAAATATAGGCCTAGAAACTCAAAATGAAGTCCACAGCCCG
GTTCAAGGATCTCTCCATAATGTCGTATATCAAACTGGTGGTGTTGGATA
TATTCGAGGTATGGGCCAAGGAACTGCTTTCCAAGGACCAGTTCAAGTTG
GAGAACTTATTCCGAACGAAGGCACCGTATCTGGCGGACTTGTATATGAT
TCAAATGAAATCCAAAAATTTAATCAAGGTGGAATATACATTCCACATGT
AGGCCAAGGAAATAGTGACAATAGATATTATCCAAATCCGGAAATCGGAG
CAGTTCCAGTCGGAAATCCTATTCCGAATGAAGGCAATGCATTTGGCGGT
CGTGGATATGATTTTAATGAAATCCAAAAACATAATCAAGGTGGGAGATA
CATTCCACATGTAGGTCATGGAAATGGTCCCAATGCACCTAAAGAACCTC
TTAAAATCGGAGGAAATATTCCAAATGTAGGCCAAGGAAACAGGGGTAAT
AGATATGATCTAAATCCTGAAATCGGAGCAGTTCCAGTCGGAAATCCTAT
TCCGAATGAAGGCAATGCATTTGGCGGTCGTGGATATGATTTAAATGAAA
TCCAAAAACATAATCAAGGTGGAAGATACATTCCACATGTAGGTCATGGA
AATGGTCCCAATGCACCTAAAGAACTTCTTAAAATCGGAGGAAATATTCC
AAATGTAGGCCAAGGAAACAGAGGGAATATATATGATCCAAATCCGGAAA
TCGGAGCAGTTCCAGTCGGAAATCCTATTCCGAATGAAGGCAATGCATTT
GGCGGTCGTGGATATGATTTAAATGAAATCCAAAAACATAATCAAGGTGG
AAGATACATTCCACATGTAGGTCATGGAAATGGTCCCAATGCACCTAAAG
AACCTCTTAAAATCGGAGGAAATATTCCAAATGTAGGCCAAGGAAACAGA
GGGAATATATATGATCCAAATCCGGAAATCGGAGCAGTTCCAGTCGGAAA
TCCTATTCCGAATGAAGGCAATGCATTTGGCGGTCGTGGATATGATTTAA
ATGAAATCCAAAAACATAATCAAGGTGGAAGATACATTCCACATGTAGGT
CATGGAAATGGTCCCAATGCACCTAAAGAACCTCTTAAAATCGGAGGAAA
TATTCCAAATGTAGGCCAAGGAAACAGAGGGAATAGATATGATCCAAATC
CGGAAATCGGAGCAGTTCCAGTCGGAAATCCTATTCCGAATGAAGGCAAT
GCATTTGGCGGTCGTGGATATGATTTAAATGAAATCCAAAAACATAATCA
AGGTGGAAGATACATTCCACATGTAGGTCATGGAAATGGTCCCAATGCAC
CTAAAGAACCTCTTAAAATCGGAGGAAATATTCCAAATGTAGGCCAAGGA
AACAGAGGTAATAGATATGATCTAAATCCTGAAATCGGACATGCCACATT
TGGTGCAACCGGTACCGGAATGCAAGGAAATAATATAGATAATCCATATA
AAAACAATCTTGGTGACAGAGCAGAAAATGAATTGGAAAGGTTTCCTCTT
GAAAATCCCAATAGGGATCATGTTATCAGGCTTAGTGATTTTTTAATCAC
AACGCCCACTCCGAGTGCACCTATAAAATTGGTAATAGAAAAGATCGCAA
GCTTTCTAGACCAT
BO29158.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:15:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4793-RD | 2733 | CG4793-PD | 1..2730 | 17..2746 | 13650 | 100 | Plus |
| CG4793-RD | 2733 | CG4793-PD | 1324..2295 | 1568..2539 | 4545 | 97.8 | Plus |
| CG4793-RD | 2733 | CG4793-PD | 1552..2523 | 1340..2311 | 4545 | 97.8 | Plus |
| CG4793-RD | 2733 | CG4793-PD | 1324..2067 | 1796..2539 | 3420 | 97.3 | Plus |
| CG4793-RD | 2733 | CG4793-PD | 1780..2523 | 1340..2083 | 3420 | 97.3 | Plus |
| CG4793-RD | 2733 | CG4793-PD | 1324..1839 | 2024..2539 | 2310 | 96.5 | Plus |
| CG4793-RD | 2733 | CG4793-PD | 2008..2523 | 1340..1855 | 2310 | 96.5 | Plus |
| CG4793-RD | 2733 | CG4793-PD | 1324..1611 | 2252..2539 | 1305 | 96.9 | Plus |
| CG4793-RD | 2733 | CG4793-PD | 2236..2523 | 1340..1627 | 1305 | 96.9 | Plus |
| CG4793-RD | 2733 | CG4793-PD | 1219..1347 | 1625..1753 | 345 | 84.5 | Plus |
| CG4793-RD | 2733 | CG4793-PD | 1219..1347 | 1853..1981 | 345 | 84.5 | Plus |
| CG4793-RD | 2733 | CG4793-PD | 1219..1347 | 2081..2209 | 345 | 84.5 | Plus |
| CG4793-RD | 2733 | CG4793-PD | 1219..1347 | 2309..2437 | 345 | 84.5 | Plus |
| CG4793-RD | 2733 | CG4793-PD | 1609..1737 | 1235..1363 | 345 | 84.5 | Plus |
| CG4793-RD | 2733 | CG4793-PD | 1837..1965 | 1235..1363 | 345 | 84.5 | Plus |
| CG4793-RD | 2733 | CG4793-PD | 2065..2193 | 1235..1363 | 345 | 84.5 | Plus |
| CG4793-RD | 2733 | CG4793-PD | 2293..2421 | 1235..1363 | 345 | 84.5 | Plus |
| CG4793-RD | 2733 | CG4793-PD | 1219..1347 | 1397..1525 | 315 | 82.9 | Plus |
| CG4793-RD | 2733 | CG4793-PD | 1381..1509 | 1235..1363 | 315 | 82.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:15:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4793-RD | 2832 | CG4793-RD | 16..2745 | 17..2746 | 13650 | 100 | Plus |
| CG4793-RD | 2832 | CG4793-RD | 1339..2310 | 1568..2539 | 4545 | 97.8 | Plus |
| CG4793-RD | 2832 | CG4793-RD | 1567..2538 | 1340..2311 | 4545 | 97.8 | Plus |
| CG4793-RD | 2832 | CG4793-RD | 1339..2082 | 1796..2539 | 3420 | 97.3 | Plus |
| CG4793-RD | 2832 | CG4793-RD | 1795..2538 | 1340..2083 | 3420 | 97.3 | Plus |
| CG4793-RD | 2832 | CG4793-RD | 1339..1854 | 2024..2539 | 2310 | 96.5 | Plus |
| CG4793-RD | 2832 | CG4793-RD | 2023..2538 | 1340..1855 | 2310 | 96.5 | Plus |
| CG4793-RD | 2832 | CG4793-RD | 1339..1626 | 2252..2539 | 1305 | 96.9 | Plus |
| CG4793-RD | 2832 | CG4793-RD | 2251..2538 | 1340..1627 | 1305 | 96.9 | Plus |
| CG4793-RD | 2832 | CG4793-RD | 1234..1362 | 2081..2209 | 345 | 84.5 | Plus |
| CG4793-RD | 2832 | CG4793-RD | 1234..1362 | 2309..2437 | 345 | 84.5 | Plus |
| CG4793-RD | 2832 | CG4793-RD | 1624..1752 | 1235..1363 | 345 | 84.5 | Plus |
| CG4793-RD | 2832 | CG4793-RD | 1234..1362 | 1625..1753 | 345 | 84.5 | Plus |
| CG4793-RD | 2832 | CG4793-RD | 1234..1362 | 1853..1981 | 345 | 84.5 | Plus |
| CG4793-RD | 2832 | CG4793-RD | 1852..1980 | 1235..1363 | 345 | 84.5 | Plus |
| CG4793-RD | 2832 | CG4793-RD | 2080..2208 | 1235..1363 | 345 | 84.5 | Plus |
| CG4793-RD | 2832 | CG4793-RD | 2308..2436 | 1235..1363 | 345 | 84.5 | Plus |
| CG4793-RD | 2832 | CG4793-RD | 1234..1362 | 1397..1525 | 315 | 82.9 | Plus |
| CG4793-RD | 2832 | CG4793-RD | 1396..1524 | 1235..1363 | 315 | 82.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:15:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15923681..15926200 | 227..2746 | 12600 | 100 | Plus |
| 2L | 23513712 | 2L | 15924794..15925765 | 1568..2539 | 4545 | 97.8 | Plus |
| 2L | 23513712 | 2L | 15925022..15925993 | 1340..2311 | 4545 | 97.8 | Plus |
| 2L | 23513712 | 2L | 15924794..15925537 | 1796..2539 | 3420 | 97.3 | Plus |
| 2L | 23513712 | 2L | 15925250..15925993 | 1340..2083 | 3420 | 97.3 | Plus |
| 2L | 23513712 | 2L | 15924794..15925309 | 2024..2539 | 2310 | 96.5 | Plus |
| 2L | 23513712 | 2L | 15925478..15925993 | 1340..1855 | 2310 | 96.5 | Plus |
| 2L | 23513712 | 2L | 15924794..15925081 | 2252..2539 | 1305 | 96.9 | Plus |
| 2L | 23513712 | 2L | 15925706..15925993 | 1340..1627 | 1305 | 96.9 | Plus |
| 2L | 23513712 | 2L | 15923410..15923619 | 17..226 | 1050 | 100 | Plus |
| 2L | 23513712 | 2L | 15925307..15925435 | 1235..1363 | 345 | 84.5 | Plus |
| 2L | 23513712 | 2L | 15925535..15925663 | 1235..1363 | 345 | 84.5 | Plus |
| 2L | 23513712 | 2L | 15925763..15925891 | 1235..1363 | 345 | 84.5 | Plus |
| 2L | 23513712 | 2L | 15924689..15924817 | 2309..2437 | 345 | 84.5 | Plus |
| 2L | 23513712 | 2L | 15925079..15925207 | 1235..1363 | 345 | 84.5 | Plus |
| 2L | 23513712 | 2L | 15924689..15924817 | 1625..1753 | 345 | 84.5 | Plus |
| 2L | 23513712 | 2L | 15924689..15924817 | 1853..1981 | 345 | 84.5 | Plus |
| 2L | 23513712 | 2L | 15924689..15924817 | 2081..2209 | 345 | 84.5 | Plus |
| 2L | 23513712 | 2L | 15836776..15836979 | 1012..809 | 315 | 77 | Minus |
| 2L | 23513712 | 2L | 15924689..15924817 | 1397..1525 | 315 | 82.9 | Plus |
| 2L | 23513712 | 2L | 15924851..15924979 | 1235..1363 | 315 | 82.9 | Plus |
| 2L | 23513712 | 2L | 15837066..15837133 | 711..644 | 205 | 86.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:15:08 has no hits.
BO29158.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:55:42 Download gff for
BO29158.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4793-RD | 16..2745 | 17..2748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:14 Download gff for
BO29158.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4793-RD | 16..2745 | 17..2748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:10 Download gff for
BO29158.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4793-RD | 16..2745 | 17..2748 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:10 Download gff for
BO29158.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15923410..15923619 | 17..226 | 100 | -> | Plus |
| 2L | 15923681..15926200 | 227..2748 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:14 Download gff for
BO29158.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15923410..15923619 | 17..226 | 100 | -> | Plus |
| arm_2L | 15923681..15926200 | 227..2748 | 99 | | Plus |
BO29158.pep Sequence
Translation from 16 to 2764
> BO29158.pep
MDRLSILLLVLGFSRIQALFCGGSMAKECVQRNRCRIGTETGRPIIDFRG
LNNGNQGCESGQTCCPKTEILQYPVQADNQPLPTECGHVNRIGVGFTITN
ARDIAQKGELPWMVALLDSRSRLPLGGGSLITRDVVLTSSTKTLEVPEKY
LIVRAGEWDFESITEERAHEDVAIRKIVRHTNLSVENGANNAALLFLARP
LKLDHHIGLICLPPPNRNFIHNRCIVSGWGKKTALDNSYMNILKKIELPL
VDRSVCQTKLQGPYGKDFILDNSLICAGGEPGKDTCKGDGGAPLACPLQS
DPNRYELLGIVNFGFGCGGPLPAAYTDVSQIRSWIDNCIQAEAVHYSPQL
GNVGQSPAPLDRYIPNIGLETQNEVHSPVQGSLHNVVYQTGGVGYIRGMG
QGTAFQGPVQVGELIPNEGTVSGGLVYDSNEIQKFNQGGIYIPHVGQGNS
DNRYYPNPEIGAVPVGNPIPNEGNAFGGRGYDFNEIQKHNQGGRYIPHVG
HGNGPNAPKEPLKIGGNIPNVGQGNRGNRYDLNPEIGAVPVGNPIPNEGN
AFGGRGYDLNEIQKHNQGGRYIPHVGHGNGPNAPKELLKIGGNIPNVGQG
NRGNIYDPNPEIGAVPVGNPIPNEGNAFGGRGYDLNEIQKHNQGGRYIPH
VGHGNGPNAPKEPLKIGGNIPNVGQGNRGNIYDPNPEIGAVPVGNPIPNE
GNAFGGRGYDLNEIQKHNQGGRYIPHVGHGNGPNAPKEPLKIGGNIPNVG
QGNRGNRYDPNPEIGAVPVGNPIPNEGNAFGGRGYDLNEIQKHNQGGRYI
PHVGHGNGPNAPKEPLKIGGNIPNVGQGNRGNRYDLNPEIGHATFGATGT
GMQGNNIDNPYKNNLGDRAENELERFPLENPNRDHVIRLSDFLITTPTPS
APIKLVIEKIASFLDH
BO29158.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:12:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4793-PD | 910 | CG4793-PD | 1..910 | 1..910 | 4979 | 100 | Plus |
| CG18477-PA | 464 | CG18477-PA | 8..344 | 4..335 | 784 | 47.1 | Plus |
| CG31780-PB | 464 | CG31780-PB | 8..344 | 4..335 | 784 | 47.1 | Plus |
| CG5390-PB | 406 | CG5390-PB | 62..406 | 12..348 | 565 | 39.1 | Plus |
| CG5390-PA | 406 | CG5390-PA | 62..406 | 12..348 | 565 | 39.1 | Plus |
