BO29164.complete Sequence
2731 bp assembled on 2011-09-19
GenBank Submission: KX795174
> BO29164.complete
GAAGTTATCAGTCGACATGCCGTTTGTGACGCCCCGTGCGGGGACAAGCA
GTGCAAGCAGTGCGCCCGGCGGACGCACCACGTTCCGTCCGCCATGGGTG
AAGGACGACGGCGGCACCAGTGGCACCAGCAGTACCACAAAGCCCACTGC
CACTCCGTGGGCAAAGAAAACAGCGACGACGACGACCGCCTCTCCGGCAA
CAAAGGAAAATGGAGAAAAGCCGACTGTGGCCAAACCAAAAGCAACTGCT
ACCACGACTGCAGCCGCGAGGAAGACTTCGACCCCTGAACCGGCTAAGAA
GACGATAGAGCCTGTAAAGAAATCTTCACTGGCCACAAGCACAACGGCGG
CCAAGAAGACACCAGAACCCGTAAATACCAAGAAAGCACCGGAGCCAATC
AAGAAAGTGGCGCCCACCGTGGGGCCCAAGAAGCCAGTAGCCACCACTTC
AGCGCTCAAAAAGAAGAAGGAGCCGACACCACCACCCGAATCCTCCTCCG
AGGAAGAAGAAAGCGAGGAGGAGGAAGAGACCGAAGAGGAAACCGAGTCT
GAGGAGGAGGAAAGCGAAGAGGAAAGCGAGTCCGAAGAGGAGGAGAGCGA
GGAAGAGGACACCACCGTGGACGAGAAGGTGCCCGAGCACGTGAAGAAGG
CGGCCCAATTGCGACCCACCACCGTGAACAAGAAGCCGGAACCGGAAAGT
GAGTTGACCCAACGTTTTACCATGGAGAAACCCAAATTACGCAGCGTGGT
GGTCAAGCGGGATAAGTCCTTGAAAAAGATGGCCACCGAAGACGACGACG
AGGCCGAGGAGGGCGAAACGGAGGAGGAGCGCGACCGGCGGCGACGTTTC
AAATTAGAGAAGCCCAAGCTGCGGCATGTCAAGCGCGAGGAGAAGCCTTT
GCCCAGCAAGAGCACCGACGACCTGGCCAAAATCCGGCCCGTGCTCAAGA
AGGTACCCAAGATCGATGAGCTCCTCAAGGAGCCGAAAGAGGAGCCAAAG
CCCGAGTTCACGACCAAGACCCTACGCAAAGCGTCCATAAAGCGCGAGCC
GAGCATCAAGAGCGTTCCCGCCCCGCCGCCGCTGCCCTCGCTGGTGCCCA
AGGCCCCGCCACCGCCGCCCCCGCCCCTAGCTCCCGGTGAGAAGAGAGTG
CTCAGCAGCACACAGAAGGAGACCCTCGAGAAGCTCAGGACTCGACCCCG
AAGGCGCCCCGACTGGTCCGAGATGATGAAGGAGGTGGAGAGCGGCAAGA
AGCTGCGCCATGTGGCCTGCAACGATAGATCTCAGCCCATCCTGACGTGC
AAGTCGATAACCAAATTGGACGACAAGTTCATCTACGAGACGGAGAAGGG
CAACTCGCACAACAAGCTGCTCAAGCAGATCCAGGGCGGCATCAAGTTGA
AGCCAACGAAGACCAACGATCGCAGCAAGCCGGTGCTGGACGGTCTGCGC
AAGTTCCGCCGACAGATGACCATCGAGGAGCAGTTGCAGAAGTCGCAGTC
GAAGATCAACATGCTCAGCGAGGCGCCTAGCAGCCATGCACTCGGACCGG
GCAGTGCCACGGCCTTGGGAGCCGGAGGATCCCGGCCCAGCATCGTATCG
GCTATGTCCATCGACGAGGAAAGCCCCGACGAGCTGGACGACATCGACAA
GATCCGCGACGATCTGCAGAGCACCAAACAAATGCTGGCACTGGAGTTGC
GAAACCGTGAGGCGCAGGATCGCGAGAACAAGAAGCTGCTGGCCAAAATC
CGCACCCTAGAGACCGAACTGGAACGCGAGAAGTCACGCGAAAAGAATCT
CGAGTACGGATCCAATGTGATTGTGGCCACCATGGATCCTACGCCCACCG
CCGAACAGACCTACGTCAACTCCCTGAAGCGCGAGGTAGAGGACGCACGG
AAGGTGTCCAAGGAGGTGGAGCAAAACTATCAGAGCACCGCCGAGCAGCT
GGTGGAGGCCAAGACGGAGATCGAGGAGCAGCGCCGCCAGATTCAGTTGC
TCGAACGCAAGTTGGCAGCAGCTCTTCAGGGCGGTGGATCCTTGGACGGA
TCGCGTCGACCAAGCGATGCAAACTTTGGAAGGGATAGCTCGCCGGAACT
GGAGCCTGAGGTCAGCGAAAGCGATCCTGACGAGCCGGAGGAGAAGAAGG
TGGAGCGCAGGGAGCGTCGCTCTGGCAAGGAGCTCAAGATCCTGCGTAGC
AAGCTTACCAAACTGAAGGTCAAAGAGGAGGCGGCCAAGAAGGAGAAGGA
CGCCCTCAAGCAAGCCATGAAGAAGAACCAGAGTATCCTCAAGGAGGAGA
ACAAGAAGTTTAAGAAGCTGGAGAAGGAGGTGCAGAAGATGGCTGCCTCC
ATGAAGCTAGACGAAGACGATGTGGACGGCGAGGAGAAGGACGAGGACGA
AGAGGAGGCCGAGGAGGAGCACGCCAGCGAAGAAGAGGAGGAATCCGACG
ACGAGTCCGAGGAGTCCGAATCGGAGGAAAGTGAGGCGGAGACGGGCAGC
GAGTCCGAGCCAGAGGACTCGCCCAACTCCGCGAAGAAGGCGAATGTGGA
GCCGCGCGTGAAGAAGCACGAGAGCCGGTTCGCGGCGATGAAGAAGTGCA
ATGTGCTGCTCCAGGCGAACGTCGACAATTTGCAGGATCAAATTGTGCAG
GTGCGATCGCGGGCCACCAATCTGCAGGACGAACTGGACGCGGTTATTGC
CGATTTGGGCTTCGCAAGCTTTCTAGACCAT
BO29164.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:00:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sals-RF | 2700 | CG31374-PF | 1..2697 | 17..2713 | 13485 | 100 | Plus |
| sals-RG | 2700 | CG31374-PG | 1..2697 | 17..2713 | 13485 | 100 | Plus |
| sals-RD | 2700 | CG31374-PD | 1..2697 | 17..2713 | 13485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sals-RF | 3272 | CG31374-RF | 235..2935 | 13..2713 | 13490 | 100 | Plus |
| sals-RG | 3294 | CG31374-RG | 257..2957 | 13..2713 | 13490 | 100 | Plus |
| sals-RD | 3314 | CG31374-RD | 277..2977 | 13..2713 | 13490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11447119..11448170 | 1064..13 | 5245 | 99.9 | Minus |
| 3R | 32079331 | 3R | 11439884..11440639 | 2030..1275 | 3780 | 100 | Minus |
| 3R | 32079331 | 3R | 11438423..11438689 | 2293..2027 | 1335 | 100 | Minus |
| 3R | 32079331 | 3R | 11438142..11438365 | 2516..2293 | 1120 | 100 | Minus |
| 3R | 32079331 | 3R | 11437884..11438083 | 2713..2514 | 1000 | 100 | Minus |
| 3R | 32079331 | 3R | 11441122..11441247 | 1189..1064 | 630 | 100 | Minus |
| 3R | 32079331 | 3R | 11440896..11440988 | 1278..1186 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:00:33 has no hits.
BO29164.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:47 Download gff for
BO29164.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sals-RD | 278..2974 | 17..2715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:07:09 Download gff for
BO29164.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sals-RD | 281..2977 | 17..2715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:09:11 Download gff for
BO29164.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sals-RD | 281..2977 | 17..2715 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:09:11 Download gff for
BO29164.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11437882..11438081 | 2516..2715 | 99 | <- | Minus |
| 3R | 11438143..11438365 | 2293..2515 | 100 | <- | Minus |
| 3R | 11438424..11438686 | 2030..2292 | 100 | <- | Minus |
| 3R | 11439885..11440635 | 1279..2029 | 100 | <- | Minus |
| 3R | 11440896..11440985 | 1189..1278 | 100 | <- | Minus |
| 3R | 11441123..11441246 | 1065..1188 | 100 | <- | Minus |
| 3R | 11447119..11448166 | 17..1064 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:07:09 Download gff for
BO29164.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7263604..7263803 | 2516..2715 | 99 | <- | Minus |
| arm_3R | 7263865..7264087 | 2293..2515 | 100 | <- | Minus |
| arm_3R | 7264146..7264408 | 2030..2292 | 100 | <- | Minus |
| arm_3R | 7265607..7266357 | 1279..2029 | 100 | <- | Minus |
| arm_3R | 7266618..7266707 | 1189..1278 | 100 | <- | Minus |
| arm_3R | 7266845..7266968 | 1065..1188 | 100 | <- | Minus |
| arm_3R | 7272841..7273888 | 17..1064 | 100 | | Minus |
BO29164.pep Sequence
Translation from 16 to 2731
> BO29164.pep
MPFVTPRAGTSSASSAPGGRTTFRPPWVKDDGGTSGTSSTTKPTATPWAK
KTATTTTASPATKENGEKPTVAKPKATATTTAAARKTSTPEPAKKTIEPV
KKSSLATSTTAAKKTPEPVNTKKAPEPIKKVAPTVGPKKPVATTSALKKK
KEPTPPPESSSEEEESEEEEETEEETESEEEESEEESESEEEESEEEDTT
VDEKVPEHVKKAAQLRPTTVNKKPEPESELTQRFTMEKPKLRSVVVKRDK
SLKKMATEDDDEAEEGETEEERDRRRRFKLEKPKLRHVKREEKPLPSKST
DDLAKIRPVLKKVPKIDELLKEPKEEPKPEFTTKTLRKASIKREPSIKSV
PAPPPLPSLVPKAPPPPPPPLAPGEKRVLSSTQKETLEKLRTRPRRRPDW
SEMMKEVESGKKLRHVACNDRSQPILTCKSITKLDDKFIYETEKGNSHNK
LLKQIQGGIKLKPTKTNDRSKPVLDGLRKFRRQMTIEEQLQKSQSKINML
SEAPSSHALGPGSATALGAGGSRPSIVSAMSIDEESPDELDDIDKIRDDL
QSTKQMLALELRNREAQDRENKKLLAKIRTLETELEREKSREKNLEYGSN
VIVATMDPTPTAEQTYVNSLKREVEDARKVSKEVEQNYQSTAEQLVEAKT
EIEEQRRQIQLLERKLAAALQGGGSLDGSRRPSDANFGRDSSPELEPEVS
ESDPDEPEEKKVERRERRSGKELKILRSKLTKLKVKEEAAKKEKDALKQA
MKKNQSILKEENKKFKKLEKEVQKMAASMKLDEDDVDGEEKDEDEEEAEE
EHASEEEEESDDESEESESEESEAETGSESEPEDSPNSAKKANVEPRVKK
HESRFAAMKKCNVLLQANVDNLQDQIVQVRSRATNLQDELDAVIADLGFA
SFLDH
BO29164.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:03:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sals-PF | 899 | CG31374-PF | 1..899 | 1..899 | 4529 | 100 | Plus |
| sals-PG | 899 | CG31374-PG | 1..899 | 1..899 | 4529 | 100 | Plus |
| sals-PD | 899 | CG31374-PD | 1..899 | 1..899 | 4529 | 100 | Plus |
| sals-PB | 935 | CG31374-PB | 1..935 | 1..899 | 4482 | 96.1 | Plus |
| sals-PC | 935 | CG31374-PC | 1..935 | 1..899 | 4482 | 96.1 | Plus |
