BO29166.complete Sequence
3220 bp assembled on 2011-09-19
GenBank Submission: KX794287
> BO29166.complete
GAAGTTATCAGTCGACATGGCACTGGTGCACACTTTCCTGGGCACCTGGG
AGATTGTCTGCTGCACCTTCGAGGGAAAACGAGAGCTGTCCGGTCTAGAG
GGCATCAAGTTCCGCCTGGATGACACCAGTGACATTACGTGGTACAACGA
TCTGGTCAGCCCGCTTCCGGAATCGAAAGACTGTGGCAACTTTTGCGAAT
CGGCCAGTGTTCTCTTCAGCTGCGAGACCTTCGATGTCCACGAGATCAAT
CCGCGCCTGGTCTTCGGCGCCTTTGCCGGCCACAGCATCGAGTTCAGCAC
CAACACCTTAACGCCGACTGATACGCTGGTTCTCAGCTGCGAGAACTGGT
ATGCCGTGGAGTGCAAGCGCCTGCAGGACAATCAAGCCGCTGGTCAGGAG
AAGCAACTGAGCTTCGGCGAGGCCCTACAGGAGTCCTACTTTAGCGATGT
GATGGTGAAGAGCTCCAGTGGCCTGGAGTACGCCCTGCACGCCTCCATAC
TGCGACTCAATGGCTTCGATTGCAGCATGTGCGTGAACAGTGCCCCGTCA
TCGGCTGCCGCTCGTCCTGCGGCCAGGTCCTGTCACAGTGGTCCGAACAC
CCCGAATCCCATACGCATCTCCGTGGCGCCGGCGTCCAACGACGATGGGC
ATGAGAAGTCCCTGCCGCGTCTGAATCTCTCGCCCATCTATCTGCAACCG
CCGTGCGACTTTCAGACCATGCCCTCGTCCGGATTGGGCGCCCAGCGCGT
GCATCAGTTCAGCAGCAGCTTCAATTGCCTGAGCAACGGCAACGCCGGGG
ACTCGGAGTCGGTGGTCAGGACCACGGGTCTGCTGAGCCTCGAATGTGGC
GGCGGTGGCGGTATGTACCGTCTGCCGCCCACTTCGCATTCGGATTCGCA
CCTGGAGACATCGCAGTCGCATTGCAAGAACATCTTTAACTTCTGCCAGG
ACCTGATGCTGCAGCCAACGCCCACTCCCATGCCGCCGACCACAGGTCTG
GCCATTTGCAGCATCCGGAGGCCACCACTATCGCCGTACCGTGCTCGCAG
TCCCTCGCCTTTTCCCAGCTCCATGGACACGCCGCCATCGTCGCCGCTGA
CGCCCGTGGGCGTGCTGTGTAATCTGCCCAACTTCCTGCTGGGCCCCATC
CTGCACTGGCTGTACACGGAGTCCCTGCTTCCGGATCTGGACGAGGATGT
GTGCGAGAAGCTCATCAGCTTCGCGGAACTGCAGCCATCGCTAACCAAGC
TGGTGGAGCCGACACGCAAATACCTGCGGCTGATACGACTCAAGAAGTTT
GTGGTCAATGTTACAATGGATCTGCACGGCATTCTCAATCGGGTCATACA
GTGCATCAATCCCGGGAATATAACCCGCGATCCGGCGCAACTCTATGCGA
CCTTTCAGGATGCCTTGCGCGAGTGTGCCATAGGCTGCGCCAAGGTGCTA
CAGTTCTGCAATATCTTCATTACGGATGCCGCACACATGACACGATATCA
GAAGAACGAAATCGTCAAGTACATCCGCACCCGCATTCCCATCTTTATGT
CGCAAATTCAACAGCTGCTACAGAACGTACTCGGAGTCTTTGTGGGTCTG
AGTGTGGACGAGAAAGCCGAGCTGGTTAATTACCTAGTACCTGAAATCGA
ATCAACCTTATTTGTATTGACCGCTGTGATAGAGGAAATCAAAAACTCAC
TGGAAATCATGTGTAAGGACCTTAAATGCTCCCACTTGGATCTGCCCCTA
CAACAACAACAGGCGGAAGATGCCATTGTCATGCAACTGCAGATTGCCGA
TGGAGGCGAACCCTCGCCACGTCCTCGTCGCGGTGCTCCAGTGGGTCTAA
CGCTCTACGATAATCTCTCGGACAAGCAGCGTCTAAGTTCGGCAGAAAAT
GACCTCAAGTTTGTGCTCTACATGTACGAGGTGCGGAAAATGCGTGACAT
TTACGGCAGAATTGTGGCGGCGCTCGAAATAATCAAGGACAAGAAGACTA
CGTTCTGCGAAATGGATTTCCTGAGCAAAAGCAGCACAATCAACCAAAAC
CTCGAGCAACTGATTATGGACATTCCCGCTTACATCTTCATCGTGGAGAA
CCTATCCGATCGACTGGACGACAAGCTGGGCTGGAAGGAGTTTAAATTCT
GCTTTAAGCTGGCCACAAGTCAGATTAATGGCGTCATTGCCAAGCTACTG
GAGCACAAGGACGCCCTGCGAGACGCCATCAGTCAGATCTGCATGCTGGT
GCGCAAACAGGAGTTCACTCAGTCCGTGATTGAGCTGGGATTGCTGGACG
ACACCTGCTTGCTGTCGAACAATTTGAAAATGGCTGATCACGAGAACAAT
CTAAATCAGGGCCTGAGCGAGAAGGATTCAATGTATCTGGATCGCAAACA
ATACTATGATTATAATAGCATTAAGTTAAACCTCATTCGGCACCTATGTG
AGCCACCCATAGCCGCCAGCAGCAATCTCTCGAAGAATGCCCTACGCCTG
CTGCACTCCACCCAGCTGGCCGACATGGAGTTCGAGGTTCACACATACGC
ACCCACGTCTGGTGCTGCCAAGTCAGGAGGCGGAACTGAAGCGGTTCCTG
AAACCGCTGAGCCGGCAGCAAAAGTCCTGCAGGTGCACAGCTTCAAGGCA
CATCGGGTGATCGTTGCCGCACGCTGTGAGTGGTTCAAGAAGGCCCTGAT
GTCGGGCATGCAGGAGTCGATCAACCGGAAGGTCATCATCACGGACACCT
CACCCGTGATCTTCCGACGCCTGCTCCTCTATCTCTATGGCGCTCCTATT
GATCGTACAGTTGGTGCCGAACAGGTGTGCGAGCTTATGCTCCTGGCAGA
TCGATACTCTATAGATGATCTTAAGGAATTGTGCGAAAACACCCTATACT
CTCTCATTGACGAGGACTCCGTGGTCTGCCTACTGGGAATAGCCGATCGA
TATATGGCCACTGCTTTAAAGTCGAAATGTCTTTCTTTTCTCTCGCAACA
TGCACAACTGACCAAGTGTGAAATATTCAAGGAATTGCCGCAGACACTTC
AGCTGGAGGTTATGGATTTGATACACTGGTTCGGACGGGTCTCGGAGCCG
TGGAACGATCGCGGCTTTAAGCCGCGTAGCAGCTCGCGCCACAGCCTAAA
GAGTCCTTCGAAGCCGCGCTCGCGATCGCGCAAGTCCTCGCCCTCCTACA
TGGCAAGCTTTCTAGACCAT
BO29166.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:04:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7058-RB | 3189 | CG7058-PB | 1..3186 | 17..3202 | 15930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7058-RB | 4548 | CG7058-RB | 295..3484 | 13..3202 | 15950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18807474..18808473 | 299..1298 | 5000 | 100 | Plus |
X | 23542271 | X | 18810026..18810478 | 2424..2876 | 2265 | 100 | Plus |
X | 23542271 | X | 18809135..18809415 | 1716..1996 | 1405 | 100 | Plus |
X | 23542271 | X | 18809716..18809968 | 2177..2429 | 1250 | 99.6 | Plus |
X | 23542271 | X | 18808726..18808940 | 1431..1645 | 1075 | 100 | Plus |
X | 23542271 | X | 18807204..18807400 | 102..298 | 985 | 100 | Plus |
X | 23542271 | X | 18809473..18809653 | 1996..2176 | 905 | 100 | Plus |
X | 23542271 | X | 18810537..18810715 | 2874..3052 | 895 | 100 | Plus |
X | 23542271 | X | 18810784..18810938 | 3048..3202 | 775 | 100 | Plus |
X | 23542271 | X | 18808536..18808671 | 1299..1434 | 680 | 100 | Plus |
X | 23542271 | X | 18809002..18809074 | 1646..1718 | 365 | 100 | Plus |
X | 23542271 | X | 18807102..18807153 | 51..102 | 260 | 100 | Plus |
X | 23542271 | X | 18806988..18807027 | 13..52 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:04:26 has no hits.
BO29166.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:49 Download gff for
BO29166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7058-RB | 299..3484 | 17..3204 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:07:46 Download gff for
BO29166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7058-RB | 299..3484 | 17..3204 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:10:27 Download gff for
BO29166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7058-RB | 299..3484 | 17..3204 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:10:27 Download gff for
BO29166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18809716..18809964 | 2177..2425 | 100 | -> | Plus |
X | 18806992..18807027 | 17..52 | 100 | -> | Plus |
X | 18807104..18807153 | 53..102 | 100 | -> | Plus |
X | 18807205..18807400 | 103..298 | 100 | -> | Plus |
X | 18807474..18808473 | 299..1298 | 100 | -> | Plus |
X | 18808536..18808670 | 1299..1433 | 100 | -> | Plus |
X | 18808729..18808940 | 1434..1645 | 100 | -> | Plus |
X | 18809002..18809073 | 1646..1717 | 100 | -> | Plus |
X | 18809137..18809414 | 1718..1995 | 100 | -> | Plus |
X | 18809473..18809653 | 1996..2176 | 100 | -> | Plus |
X | 18810028..18810477 | 2426..2875 | 100 | -> | Plus |
X | 18810539..18810715 | 2876..3052 | 100 | -> | Plus |
X | 18810789..18810938 | 3053..3204 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:07:46 Download gff for
BO29166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18701025..18701060 | 17..52 | 100 | -> | Plus |
arm_X | 18701137..18701186 | 53..102 | 100 | -> | Plus |
arm_X | 18701238..18701433 | 103..298 | 100 | -> | Plus |
arm_X | 18701507..18702506 | 299..1298 | 100 | -> | Plus |
arm_X | 18702569..18702703 | 1299..1433 | 100 | -> | Plus |
arm_X | 18702762..18702973 | 1434..1645 | 100 | -> | Plus |
arm_X | 18703035..18703106 | 1646..1717 | 100 | -> | Plus |
arm_X | 18703170..18703447 | 1718..1995 | 100 | -> | Plus |
arm_X | 18703506..18703686 | 1996..2176 | 100 | -> | Plus |
arm_X | 18703749..18703997 | 2177..2425 | 100 | -> | Plus |
arm_X | 18704061..18704510 | 2426..2875 | 100 | -> | Plus |
arm_X | 18704572..18704748 | 2876..3052 | 100 | -> | Plus |
arm_X | 18704822..18704971 | 3053..3204 | 98 | | Plus |
BO29166.pep Sequence
Translation from 16 to 3220
> BO29166.pep
MALVHTFLGTWEIVCCTFEGKRELSGLEGIKFRLDDTSDITWYNDLVSPL
PESKDCGNFCESASVLFSCETFDVHEINPRLVFGAFAGHSIEFSTNTLTP
TDTLVLSCENWYAVECKRLQDNQAAGQEKQLSFGEALQESYFSDVMVKSS
SGLEYALHASILRLNGFDCSMCVNSAPSSAAARPAARSCHSGPNTPNPIR
ISVAPASNDDGHEKSLPRLNLSPIYLQPPCDFQTMPSSGLGAQRVHQFSS
SFNCLSNGNAGDSESVVRTTGLLSLECGGGGGMYRLPPTSHSDSHLETSQ
SHCKNIFNFCQDLMLQPTPTPMPPTTGLAICSIRRPPLSPYRARSPSPFP
SSMDTPPSSPLTPVGVLCNLPNFLLGPILHWLYTESLLPDLDEDVCEKLI
SFAELQPSLTKLVEPTRKYLRLIRLKKFVVNVTMDLHGILNRVIQCINPG
NITRDPAQLYATFQDALRECAIGCAKVLQFCNIFITDAAHMTRYQKNEIV
KYIRTRIPIFMSQIQQLLQNVLGVFVGLSVDEKAELVNYLVPEIESTLFV
LTAVIEEIKNSLEIMCKDLKCSHLDLPLQQQQAEDAIVMQLQIADGGEPS
PRPRRGAPVGLTLYDNLSDKQRLSSAENDLKFVLYMYEVRKMRDIYGRIV
AALEIIKDKKTTFCEMDFLSKSSTINQNLEQLIMDIPAYIFIVENLSDRL
DDKLGWKEFKFCFKLATSQINGVIAKLLEHKDALRDAISQICMLVRKQEF
TQSVIELGLLDDTCLLSNNLKMADHENNLNQGLSEKDSMYLDRKQYYDYN
SIKLNLIRHLCEPPIAASSNLSKNALRLLHSTQLADMEFEVHTYAPTSGA
AKSGGGTEAVPETAEPAAKVLQVHSFKAHRVIVAARCEWFKKALMSGMQE
SINRKVIITDTSPVIFRRLLLYLYGAPIDRTVGAEQVCELMLLADRYSID
DLKELCENTLYSLIDEDSVVCLLGIADRYMATALKSKCLSFLSQHAQLTK
CEIFKELPQTLQLEVMDLIHWFGRVSEPWNDRGFKPRSSSRHSLKSPSKP
RSRSRKSSPSYMASFLDH
BO29166.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:03:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7058-PB | 1062 | CG7058-PB | 1..1062 | 1..1062 | 5532 | 100 | Plus |