BO29168.complete Sequence
3877 bp assembled on 2011-09-19
GenBank Submission: KX798561
> BO29168.complete
GAAGTTATCAGTCGACATGGGGGAAAGTCAGCTGCTGCTGTTGCTGCGGC
TCCTGCTGCTTCCTACAGTCCTCATTTCCTGGATGCACTGTGCCGGGGCC
TCCACGGCGGACATCTACAAGGGCGCTCGCCTGGGCCACCGTATCGTTCA
GACGCGCTATGGCCGACTTCATGGACTCATCCTGCCCCTGGATAGCTTTC
GCTTCCTGCGATCCGTAGAGGTCTTCCTGGGTGTGCCATATGCAACGCCT
CCCACCAAACAAAATCGGTTTAGTCCCACGAGAGCTCCAGCGCCTTGGGA
CGGCATCCGGATATCGGATAAATACAGTCCCGTGTGTCCGCAGCGTTTGC
CCAATATCCAAAATGAGACGGCGGCGCTGGAGAAGATGCCCAAGGGTCGC
CTGGAGTACTTAAAGAGATTGCTGCCATTTCTTGAAAACCAGTCCGAGGA
CTGCCTGTACCTAAATGTGTTCTCGCCGGTCAATGCCGGGGCCAATGAGA
AGAAGTTGCCGGTGATTGTGTTCATACACGGCGAGTCCTTCGAGTGGAGC
AGCGGAAATCCTTACGACGGCAGTGTCCTGGCGAGCTACGGGGAAGTTGT
GGTGGTAACACTCAACTACCGACTCGGAATATTAGGTTTCCTCAACGCCA
ATCCCAATCCACATGCCCATGCCAGAGTGGCCAACTACGGGCTGATGGAC
CAGATGGCTGCCCTGCATTGGATTCAGCAGAATATCCAAAAGTTTGGCGG
AGATCCCAATTCGGTGACGTTGGCGGGTCATGGAACGGGTGCAGCCTGTA
TTAATTACCTAATGACCTCGCCTACAATGGTCCGTGGTCTCTTCCACCGG
GCTATTCTCATGTCCGGATCAGCGTACTCATCGTGGGCTTTGGTCGAGGA
TCCAGTACTATTTGCCATCAAGCTGGCCAAGGAGGTTAACTGCACCATTC
CCGATGATATCAATCGCCACCACGAGCAGATTGTCGATTGTCTGAGGGAT
GTTCCCCTGGAAGACCTTTACCTAGCCGACATTCAGGCTCCAAATTTTCT
CACATCCTTCGGGCCTTCGGTTGATGGCGTTGTCATACGACCCGGGCATT
CCAATCTCGATATCGATGATTTAATGGCGCGCAACTCGAGGCGCTCGTCA
GCGGACTCCGGTTTCCAGTCGTCCGCCGGAGGTGGTGGCGGGCAAGGAGG
CGGGGCCGGTGGCGGAGGAGGCGGTGGCTCCGGATCGTCGTTCGGCGGTG
GATATTTCGGCGGCAGCGGGGCCGGAACGATGAATATGGGCGGTCACTAT
GACGTCCTGTTTGGCGTCGTTACGGGCGAATCGATTTGGCGCTTCAGTGC
CCACGATATACAAAATGGTTTCGAGGGCGAGAGACGCGATAAAATTATCC
GCACCTACGTCCGCAACGCCTACAATTATCACCTCAACGAGATTTTCTAT
ACGATCGTCAACGAGTACACGGATTGGGATCGCACCTCGCAGCATCCGAT
CAATACCCGCGATACGGCTGTAGCCGCCCTATCCGATGCCCAGTTTGTGG
CACCGATTGTGCGGGCTGGTGATATCCTGGCGGCCAATTCCCCGCCGCCG
GTCAGCTCATCCTCGACCGCTGGGTCGCCGGGTGCAAATGCGGCTGCTTC
GACCTCAGCGGGCTCCACTCAGCCCTCCGGTCGGTGCTACTTTTACGTGT
TCGATTACCAGACAAAGGACGGCGACTATCCACAGAGAATGGGCACTGTG
CACGGCGAGGACTTGCCCTACATTTTCGGCGCCCCACTGGTCGACGGCTT
TAGTCACTTTCCGCAAAACTACACCAAATCGGAGACGGCTCTTTCCGAGG
CGGTGATGATATTCTGGACCAACTTTGCTCGCACCGGCAATCCCAATGAA
CACCATCGCCAGGACTCGTCGCTGCCGGTTTCAAAGGAGCGCAACCGCTT
TCGCAGCATCACCTGGGAAAATTATGATCCGCTGCACCAGAAGTATTTGG
AAATAGGAATGAAGCCGCGCATTAAGAATCACTTTCGGGCCCATCAACTC
TCGATTTGGCTGCGCCTGATACCGGAGCTTCATCGCGCCGGGATGGAGGA
TGTGATAGCCCGGCACAATCTGTTCCGCAATCACGACGATATGGACCTGT
ACGAGGGACCCGTTAAACCGGATCCGTTTGGCATATCGACAGCCGCCGGA
GCAAGTGGCTCCTCATCCTCGTCGTCGTCCTCATCCCGCCTTCTGCTCGT
CGATGAGCAATTGATGATGAAGAAGGGACGCGGCCTGAACGGCTCGGCCT
ATTTGAACGGCATATTGGGCGTGACCACCGTGGAGCCGAACAACATGTAC
ACGACCTGCATACCCATTGGGGGAAACTACTCGAGCAGCGGTGGTGTCTT
CGCACCCACCACTCTGGCCAACGCCTCCTCGGACACTCTGGCCTCCGGAT
TCGAGGCAGCCGGCTATGCGGCCTATTCGACGGCCCTGAGTGTTACGATT
GCCATTGGCTGCAGCCTGCTCATACTGAACGTGTTGATTTTCGCCGGAGT
CTACTATCAGCGCGACAAGACGCGGCTGGAGGTGAAGACACTGCAGAAGC
AGTACCAGCAGCGTAGCCTGCACCAGCAGGTCCCCTACCCACCGGAGCCC
ATCAAGCACGCCCACTACCACATGGGTCACTCGCAGAGCTCGGCCAATGT
CATCGTCGATGTGGAGAGCCATCAGGACCAGGCCGGCCAGGCGGCCATGT
TGCTCCAAGCCGCAGCAGCAGCCGCAGCAGCAGCGGCCAACGACGTGAAG
CCACCGCCACCGCACATCTGCTCAAACACAGGAATGCAACAGCAGCAGCA
AGTGGGTGGTGGCAGCGGTGGTGCCCTGAATAATGGTGGCATCGAGGGGT
CCAAGGTGACCACAGACAACCTGGGCAACGTCACCTACAGCACTAGCTCC
AAGCAGCAGCAGCAACACCAGCAACAACAGCAGCAGCAGCAGCGTGAGCA
CATGCAAATCAAGGGAATGACCGGCACGCAAACATTCGGACGAAGTGGCT
CCGGATCGGGAGGCGGGGCTGGGGGCGGAGCCGGTTCCGCTTCCGGTGGC
GCCTCCGTGGTGGTGTCCGGCAGCAGCGTTAGCTACAATCCCGGCATGAT
GACGCTGCCCAAGTCGGGCGGTCTCCATCATGCGGCCACTTTGAATTATG
CGCGCAACACGACCGCCTTGAATATGTCGGGCGGCGGCACCGCCCTAGTG
GATAGTCGCGGCAATGTCCTGCTCACCAGCACCGCAGTGGGTCCTGGCAT
GGCCGGTACTGGTGCTGGAGGAGGATCCTCTGGTGGCGGCGGAGGCGGAG
ATTGCATGACCCTGCCACGCAATCTTGGTCTGGCGGCCGCAGGACGACAC
AATCCCACTACAGCAGAGCTGCAGCAATATCAGCAGCAACAGCAGTCGAG
CAAACATCAGTCGAATGGAGCTGTCCTCACTGGCATGCAGTCGCATCACA
TACGCGGACCACGCCCACCGCTCCGCACCGCCTCCTCGACGACAACGAAC
AGCAGCAGCAATAACTCGGCAATGGGCGTGGCCGTGGGCGTAGGCGGGGG
CGTTGGTAACATGCTCCTGGACCAAACGCCATCCGGCGGCAGCAGCAGCA
GCGGCGTAAGCAGCGCACCCAGCTCCTCAAAGGGTCACCACACCCACTCG
CACTCCCATGCCGCCCACCTGGTGCACTCGCACGGCGACGGCCTCGTCCT
GACCTCCGCCTCGCCCGTGGGCGGCCAGCAACAGCAGCACCCGCAGCAGC
ATCAGCATCCGCAGCAGCAGCAGCAAGTGCCGCAGGCGGCGATGGACGAG
ATGCGCGTCGCAAGCTTTCTAGACCAT
BO29168.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:08:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nlg4-RD | 3846 | CG34139-PD | 1..3843 | 17..3859 | 19215 | 100 | Plus |
| Nlg4-RE | 3843 | CG34139-PE | 1..3840 | 17..3859 | 19135 | 99.9 | Plus |
| Nlg4-RC | 3843 | CG34139-PC | 1..3840 | 17..3859 | 19135 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nlg4-RD | 5452 | CG34139-RD | 863..4705 | 17..3859 | 19215 | 100 | Plus |
| Nlg4-RE | 6243 | CG34139-RE | 863..4702 | 17..3859 | 19135 | 99.9 | Plus |
| Nlg4-RC | 5468 | CG34139-RC | 882..4721 | 17..3859 | 19135 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20227516..20228101 | 2828..3413 | 2930 | 100 | Plus |
| 3R | 32079331 | 3R | 20226344..20226855 | 2321..2832 | 2560 | 100 | Plus |
| 3R | 32079331 | 3R | 20237885..20238333 | 3411..3859 | 2245 | 100 | Plus |
| 3R | 32079331 | 3R | 20212732..20213169 | 634..1071 | 2190 | 100 | Plus |
| 3R | 32079331 | 3R | 20216209..20216643 | 1453..1887 | 2175 | 100 | Plus |
| 3R | 32079331 | 3R | 20213530..20213914 | 1069..1453 | 1925 | 100 | Plus |
| 3R | 32079331 | 3R | 20219847..20220163 | 2005..2321 | 1585 | 100 | Plus |
| 3R | 32079331 | 3R | 20211255..20211507 | 17..269 | 1265 | 100 | Plus |
| 3R | 32079331 | 3R | 20211746..20211964 | 267..485 | 1095 | 100 | Plus |
| 3R | 32079331 | 3R | 20212462..20212614 | 485..637 | 765 | 100 | Plus |
| 3R | 32079331 | 3R | 20217047..20217167 | 1887..2007 | 605 | 100 | Plus |
| 3R | 32079331 | 3R | 7597008..7597149 | 466..325 | 215 | 76.8 | Minus |
| 3R | 32079331 | 3R | 7573845..7573971 | 1877..1751 | 200 | 77.2 | Minus |
Blast to na_te.dros performed 2014-11-27 08:08:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1062..1094 | 60..28 | 129 | 87.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2378 | 60..29 | 124 | 87.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1558..1592 | 60..26 | 121 | 82.9 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1100..1154 | 3405..3458 | 119 | 70.9 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 977..1007 | 3415..3445 | 119 | 87.1 | Plus |
BO29168.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:50 Download gff for
BO29168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34139-RD | 863..4705 | 17..3861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:17 Download gff for
BO29168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34139-RD | 863..4705 | 17..3861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:11:52 Download gff for
BO29168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nlg4-RD | 863..4705 | 17..3861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:52 Download gff for
BO29168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20211255..20211505 | 17..267 | 100 | -> | Plus |
| 3R | 20211747..20211964 | 268..485 | 100 | -> | Plus |
| 3R | 20212463..20212612 | 486..635 | 100 | -> | Plus |
| 3R | 20212734..20213167 | 636..1069 | 100 | -> | Plus |
| 3R | 20213531..20213914 | 1070..1453 | 100 | -> | Plus |
| 3R | 20216210..20216643 | 1454..1887 | 100 | -> | Plus |
| 3R | 20217048..20217166 | 1888..2006 | 100 | -> | Plus |
| 3R | 20219849..20220163 | 2007..2321 | 100 | -> | Plus |
| 3R | 20226345..20226854 | 2322..2831 | 100 | -> | Plus |
| 3R | 20227520..20228101 | 2832..3413 | 100 | -> | Plus |
| 3R | 20237888..20238333 | 3414..3861 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:17 Download gff for
BO29168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16036977..16037227 | 17..267 | 100 | -> | Plus |
| arm_3R | 16037469..16037686 | 268..485 | 100 | -> | Plus |
| arm_3R | 16038185..16038334 | 486..635 | 100 | -> | Plus |
| arm_3R | 16038456..16038889 | 636..1069 | 100 | -> | Plus |
| arm_3R | 16039253..16039636 | 1070..1453 | 100 | -> | Plus |
| arm_3R | 16041932..16042365 | 1454..1887 | 100 | -> | Plus |
| arm_3R | 16042770..16042888 | 1888..2006 | 100 | -> | Plus |
| arm_3R | 16045571..16045885 | 2007..2321 | 100 | -> | Plus |
| arm_3R | 16052067..16052576 | 2322..2831 | 100 | -> | Plus |
| arm_3R | 16053242..16053823 | 2832..3413 | 100 | -> | Plus |
| arm_3R | 16063610..16064055 | 3414..3861 | 99 | | Plus |
BO29168.pep Sequence
Translation from 16 to 3877
> BO29168.pep
MGESQLLLLLRLLLLPTVLISWMHCAGASTADIYKGARLGHRIVQTRYGR
LHGLILPLDSFRFLRSVEVFLGVPYATPPTKQNRFSPTRAPAPWDGIRIS
DKYSPVCPQRLPNIQNETAALEKMPKGRLEYLKRLLPFLENQSEDCLYLN
VFSPVNAGANEKKLPVIVFIHGESFEWSSGNPYDGSVLASYGEVVVVTLN
YRLGILGFLNANPNPHAHARVANYGLMDQMAALHWIQQNIQKFGGDPNSV
TLAGHGTGAACINYLMTSPTMVRGLFHRAILMSGSAYSSWALVEDPVLFA
IKLAKEVNCTIPDDINRHHEQIVDCLRDVPLEDLYLADIQAPNFLTSFGP
SVDGVVIRPGHSNLDIDDLMARNSRRSSADSGFQSSAGGGGGQGGGAGGG
GGGGSGSSFGGGYFGGSGAGTMNMGGHYDVLFGVVTGESIWRFSAHDIQN
GFEGERRDKIIRTYVRNAYNYHLNEIFYTIVNEYTDWDRTSQHPINTRDT
AVAALSDAQFVAPIVRAGDILAANSPPPVSSSSTAGSPGANAAASTSAGS
TQPSGRCYFYVFDYQTKDGDYPQRMGTVHGEDLPYIFGAPLVDGFSHFPQ
NYTKSETALSEAVMIFWTNFARTGNPNEHHRQDSSLPVSKERNRFRSITW
ENYDPLHQKYLEIGMKPRIKNHFRAHQLSIWLRLIPELHRAGMEDVIARH
NLFRNHDDMDLYEGPVKPDPFGISTAAGASGSSSSSSSSSRLLLVDEQLM
MKKGRGLNGSAYLNGILGVTTVEPNNMYTTCIPIGGNYSSSGGVFAPTTL
ANASSDTLASGFEAAGYAAYSTALSVTIAIGCSLLILNVLIFAGVYYQRD
KTRLEVKTLQKQYQQRSLHQQVPYPPEPIKHAHYHMGHSQSSANVIVDVE
SHQDQAGQAAMLLQAAAAAAAAAANDVKPPPPHICSNTGMQQQQQVGGGS
GGALNNGGIEGSKVTTDNLGNVTYSTSSKQQQQHQQQQQQQQREHMQIKG
MTGTQTFGRSGSGSGGGAGGGAGSASGGASVVVSGSSVSYNPGMMTLPKS
GGLHHAATLNYARNTTALNMSGGGTALVDSRGNVLLTSTAVGPGMAGTGA
GGGSSGGGGGGDCMTLPRNLGLAAAGRHNPTTAELQQYQQQQQSSKHQSN
GAVLTGMQSHHIRGPRPPLRTASSTTTNSSSNNSAMGVAVGVGGGVGNML
LDQTPSGGSSSSGVSSAPSSSKGHHTHSHSHAAHLVHSHGDGLVLTSASP
VGGQQQQHPQQHQHPQQQQQVPQAAMDEMRVASFLDH
BO29168.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:03:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nlg4-PD | 1281 | CG34139-PD | 1..1281 | 1..1281 | 6725 | 100 | Plus |
| Nlg4-PE | 1280 | CG34139-PE | 1..1280 | 1..1281 | 6709 | 99.9 | Plus |
| Nlg4-PC | 1280 | CG34139-PC | 1..1280 | 1..1281 | 6709 | 99.9 | Plus |
| Nlg4-PB | 1280 | CG34139-PB | 1..1280 | 1..1281 | 6709 | 99.9 | Plus |
| CG34127-PB | 1159 | CG34127-PB | 151..1085 | 37..996 | 1905 | 42.8 | Plus |
