BO29173.complete Sequence
1753 bp assembled on 2011-09-19
GenBank Submission: KX796586
> BO29173.complete
GAAGTTATCAGTCGACATGCCAATCGGCATGACGAACATGTCGCCAGCAG
CGTCATCACTGGTTTTCCTCGCTCTTCTGCAGACAGTTACCTGCTACACC
GTCATCATCACTGCTCCCGAACAGGCCCTCATCGGATCCACCATCAATGT
GTCCGCCCAGCTCTTCGATGGCGACAAACCGGCTGACGGAGGCAGGCCCT
ACAGGTTCACATGGTCCGACAGTGCTGGCCATCGAAAGGTGATTGAAACG
AACAGCGTTAGCAGCAATTGGTCTGTGGTCTTCACGCAAGAACAACCGGC
GACGCATGTCATCAAGGTGGAAGTGGAGAAGTTCGTCACATTTTTTTGGG
TGACGGAGGCTAAGGCCTCGAGGGGAATCAAGCTGGACAGCTTGCTCGGC
GGCAGCCTGGAGCTGATTCAGAACAATGTGATGCGACCCCATGAGTTTGT
GTCCACCCAGGAGGCGGTGAATCACAGCGTATCACTTTCCGATGCGGACC
TACTTTTTCTGCAGTCGAAGGGTTATCGCATTCTGACGTATTGGTTTCAG
AACTGCACATATCTCGGCATGTCCAGTGCGTTGGACTATGTGGCCACATA
TCCGAAAGCTGAGCAATATTATGACATGGAGGCGTTAGTGGTGGCTTCAC
TGGAACTTCCGCCGGAGCCGACGCCCTCAACTACGACGACCACCACCACA
ACAACCACAACTACCACTACCACCACCACTACAACTCCAGCAACAACAAC
CACTTCAACAACACCTGCCACAACGACCACTCCAAAAACCACAACATCAT
CCACAAGTACAACGACCACAACGACTCCAAAGCCGCCGGCACGATCCAAA
CGTGACTTAATCCAGGCCATGCATGCCAACGCTGCTCTTCTAGGCTTGAA
CTTAACCAGTGCGCTAAACCAGCAAAAGTCATCCGCTGGGAATGTGTCCG
TGGCTTTGGTCAATCCGCTGGGAGTGCGAAGGGTGTCCAAGCTCACACTG
GTGCCCGGTCTGCAGCCGCCTTTCGATTGCGTGAGCAAAAAGTTCGTCGC
CCAGGACCCCAAGCAGATATACGGCTACTACCAGCATCGCGTTGTATCCA
AGGATCCTATAACCGGTTTCGGCACCACGGGCAAGAATTGGTTGCAACAC
TGGGAGGTGCTTAAACTCAATGTCAACTGCAAAGGATCGCCGCCGTTTGA
GCTTTGCACTCGAGTCTTCACTGCTCCTTACAACTCCACGGGCAATGAGA
CCTGCGATCAGTATGAGCCGATAGAGACGTGCTCGTATGAGTATATGCGT
TACTTCAGTGAAAGCAAGACCATTCTGTTCTTCATACGCAACGAGGTCTC
CCAAACACTTAATCAGGTCACCATAAACATGTATGAAGCTCAGCGTCAAT
CTCAGCTTTCGGTTGTAGTTGTGCCCGTAAGCTGCACTTTGGTGGCGGTG
ATTCTTGTTGTTTTCGGCGTGGCCTACTATATTCAACGGGGAAATCGCTT
CAATGTTGAAGTGGCCGATTTCAACTTCGGCGACACACAATCGGTGGACA
TGGAGTACAAGACATTCCCGCAGCGCCTAATCGATAGCATCCGCGATGCG
TGCACGTGGCCGGGTCAGCGGCGTCACTCGCAGTCCAGCGTAGATCTCAT
GGCGGACCAGGACCAGCCGCCCAGTCCGAGCTTTGCAGGCAATGTGGGCG
ATGTAGACAGCAACCTGCGCTACAACACTTTCAACGCAAGCTTTCTAGAC
CAT
BO29173.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:10:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16953-RB | 1722 | CG16953-PB | 1..1719 | 17..1735 | 8595 | 100 | Plus |
| Muc96D-RA | 2646 | CG31439-PA | 1648..1792 | 686..830 | 185 | 75.2 | Plus |
| Muc96D-RA | 2646 | CG31439-PA | 1811..1963 | 678..830 | 180 | 74.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16953-RB | 2813 | CG16953-RB | 362..2080 | 17..1735 | 8595 | 100 | Plus |
| Muc96D-RA | 2796 | CG31439-RA | 1675..1819 | 686..830 | 185 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20583380..20584246 | 1103..237 | 4335 | 100 | Minus |
| 3R | 32079331 | 3R | 20582503..20582741 | 1735..1497 | 1195 | 100 | Minus |
| 3R | 32079331 | 3R | 20582971..20583136 | 1388..1223 | 830 | 100 | Minus |
| 3R | 32079331 | 3R | 20585135..20585291 | 240..84 | 785 | 100 | Minus |
| 3R | 32079331 | 3R | 20583197..20583317 | 1223..1103 | 605 | 100 | Minus |
| 3R | 32079331 | 3R | 20582798..20582913 | 1497..1382 | 565 | 99.1 | Minus |
| 3R | 32079331 | 3R | 20585403..20585472 | 86..17 | 350 | 100 | Minus |
| 3R | 32079331 | 3R | 25398765..25398909 | 830..686 | 185 | 75.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:10:20 has no hits.
BO29173.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:51 Download gff for
BO29173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16953-RB | 343..2061 | 17..1737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:29 Download gff for
BO29173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16953-RB | 362..2080 | 17..1737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:27 Download gff for
BO29173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16953-RB | 362..2080 | 17..1737 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:27 Download gff for
BO29173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20582971..20583135 | 1224..1388 | 100 | <- | Minus |
| 3R | 20583197..20583316 | 1104..1223 | 100 | <- | Minus |
| 3R | 20582501..20582740 | 1498..1737 | 99 | <- | Minus |
| 3R | 20582798..20582906 | 1389..1497 | 100 | <- | Minus |
| 3R | 20583380..20584244 | 239..1103 | 100 | <- | Minus |
| 3R | 20585137..20585288 | 87..238 | 100 | <- | Minus |
| 3R | 20585403..20585472 | 17..86 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:29 Download gff for
BO29173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16408223..16408462 | 1498..1737 | 99 | <- | Minus |
| arm_3R | 16408520..16408628 | 1389..1497 | 100 | <- | Minus |
| arm_3R | 16408693..16408857 | 1224..1388 | 100 | <- | Minus |
| arm_3R | 16408919..16409038 | 1104..1223 | 100 | <- | Minus |
| arm_3R | 16409102..16409966 | 239..1103 | 100 | <- | Minus |
| arm_3R | 16410859..16411010 | 87..238 | 100 | <- | Minus |
| arm_3R | 16411125..16411194 | 17..86 | 100 | | Minus |
BO29173.pep Sequence
Translation from 16 to 1753
> BO29173.pep
MPIGMTNMSPAASSLVFLALLQTVTCYTVIITAPEQALIGSTINVSAQLF
DGDKPADGGRPYRFTWSDSAGHRKVIETNSVSSNWSVVFTQEQPATHVIK
VEVEKFVTFFWVTEAKASRGIKLDSLLGGSLELIQNNVMRPHEFVSTQEA
VNHSVSLSDADLLFLQSKGYRILTYWFQNCTYLGMSSALDYVATYPKAEQ
YYDMEALVVASLELPPEPTPSTTTTTTTTTTTTTTTTTTTPATTTTSTTP
ATTTTPKTTTSSTSTTTTTTPKPPARSKRDLIQAMHANAALLGLNLTSAL
NQQKSSAGNVSVALVNPLGVRRVSKLTLVPGLQPPFDCVSKKFVAQDPKQ
IYGYYQHRVVSKDPITGFGTTGKNWLQHWEVLKLNVNCKGSPPFELCTRV
FTAPYNSTGNETCDQYEPIETCSYEYMRYFSESKTILFFIRNEVSQTLNQ
VTINMYEAQRQSQLSVVVVPVSCTLVAVILVVFGVAYYIQRGNRFNVEVA
DFNFGDTQSVDMEYKTFPQRLIDSIRDACTWPGQRRHSQSSVDLMADQDQ
PPSPSFAGNVGDVDSNLRYNTFNASFLDH
BO29173.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:04:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16953-PB | 573 | CG16953-PB | 1..573 | 1..573 | 2978 | 100 | Plus |
| CG34220-PA | 726 | CG34220-PA | 528..586 | 215..273 | 212 | 74.6 | Plus |
| CG34220-PA | 726 | CG34220-PA | 525..580 | 215..270 | 211 | 73.2 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 600..651 | 219..270 | 210 | 78.8 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 266..324 | 216..274 | 209 | 71.2 | Plus |
| CG34220-PA | 726 | CG34220-PA | 275..334 | 215..270 | 208 | 71.7 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 437..492 | 216..271 | 208 | 73.2 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 461..511 | 219..271 | 206 | 79.2 | Plus |
| CG34220-PA | 726 | CG34220-PA | 524..578 | 216..270 | 205 | 72.7 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 148..206 | 216..274 | 205 | 69.5 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 184..239 | 219..274 | 204 | 73.2 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 302..357 | 219..274 | 204 | 73.2 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 383..437 | 219..273 | 204 | 74.5 | Plus |
| CG34220-PA | 726 | CG34220-PA | 74..128 | 216..270 | 203 | 72.7 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 173..226 | 218..270 | 203 | 77.8 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 206..259 | 218..270 | 203 | 77.8 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 291..344 | 218..270 | 203 | 77.8 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 324..377 | 218..270 | 203 | 77.8 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 579..631 | 219..271 | 203 | 75.5 | Plus |
| CG34220-PA | 726 | CG34220-PA | 114..165 | 219..270 | 202 | 76.9 | Plus |
| CG34220-PA | 726 | CG34220-PA | 123..174 | 219..270 | 202 | 76.9 | Plus |
| CG34220-PA | 726 | CG34220-PA | 289..340 | 219..270 | 202 | 76.9 | Plus |
| CG34220-PA | 726 | CG34220-PA | 298..349 | 219..270 | 202 | 76.9 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 172..223 | 219..270 | 202 | 76.9 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 205..256 | 219..270 | 202 | 76.9 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 290..341 | 219..270 | 202 | 76.9 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 323..374 | 219..270 | 202 | 76.9 | Plus |
| CG34220-PA | 726 | CG34220-PA | 274..328 | 216..270 | 201 | 72.7 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 519..574 | 216..271 | 201 | 71.4 | Plus |
| CG34220-PA | 726 | CG34220-PA | 107..159 | 219..270 | 200 | 77.4 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 405..457 | 219..270 | 200 | 77.4 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 573..624 | 219..270 | 200 | 76.9 | Plus |
| CG34220-PA | 726 | CG34220-PA | 108..162 | 216..270 | 199 | 72.7 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 543..594 | 219..270 | 199 | 75 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 567..621 | 216..270 | 199 | 72.7 | Plus |
| CG34220-PA | 726 | CG34220-PA | 86..137 | 219..270 | 198 | 75 | Plus |
| CG34220-PA | 726 | CG34220-PA | 541..596 | 219..274 | 198 | 71.4 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 544..596 | 218..270 | 198 | 73.6 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 206..260 | 216..270 | 197 | 72.7 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 291..345 | 216..270 | 197 | 72.7 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 324..378 | 216..270 | 197 | 72.7 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 173..227 | 216..270 | 197 | 72.7 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 406..462 | 218..274 | 197 | 70.2 | Plus |
| CG34220-PA | 726 | CG34220-PA | 147..200 | 221..274 | 196 | 72.2 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 510..567 | 219..273 | 196 | 70.7 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 576..631 | 219..274 | 196 | 71.4 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 601..658 | 216..273 | 196 | 69 | Plus |
| CG34220-PA | 726 | CG34220-PA | 542..601 | 219..278 | 195 | 66.7 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 128..193 | 208..270 | 195 | 62.1 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 214..266 | 219..271 | 195 | 73.6 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 238..288 | 219..269 | 195 | 76.5 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 266..324 | 215..273 | 195 | 67.8 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 332..384 | 219..271 | 195 | 73.6 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 362..420 | 219..270 | 195 | 71.2 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 677..740 | 216..277 | 195 | 67.2 | Plus |
| CG34220-PA | 726 | CG34220-PA | 120..171 | 219..270 | 194 | 75 | Plus |
| CG34220-PA | 726 | CG34220-PA | 295..346 | 219..270 | 194 | 75 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 169..220 | 219..270 | 194 | 75 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 202..253 | 219..270 | 194 | 75 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 211..266 | 219..274 | 194 | 71.4 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 235..286 | 219..270 | 194 | 75 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 244..295 | 219..270 | 194 | 75 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 287..338 | 219..270 | 194 | 75 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 320..371 | 219..270 | 194 | 75 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 329..384 | 219..274 | 194 | 71.4 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 415..466 | 219..270 | 194 | 75 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 489..544 | 219..274 | 194 | 71.4 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 603..658 | 219..274 | 194 | 71.4 | Plus |
| CG34220-PA | 726 | CG34220-PA | 71..122 | 219..270 | 193 | 75 | Plus |
| CG34220-PA | 726 | CG34220-PA | 85..136 | 219..270 | 193 | 75 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 357..412 | 215..270 | 193 | 71.4 | Plus |
| CG34220-PA | 726 | CG34220-PA | 115..166 | 219..270 | 192 | 75 | Plus |
| CG34220-PA | 726 | CG34220-PA | 117..168 | 219..270 | 192 | 75 | Plus |
| CG34220-PA | 726 | CG34220-PA | 290..341 | 219..270 | 192 | 75 | Plus |
| CG34220-PA | 726 | CG34220-PA | 292..343 | 219..270 | 192 | 75 | Plus |
| CG34220-PA | 726 | CG34220-PA | 79..130 | 219..270 | 191 | 75 | Plus |
| CG34220-PA | 726 | CG34220-PA | 515..577 | 215..270 | 189 | 65.1 | Plus |
| CG34220-PA | 726 | CG34220-PA | 87..145 | 219..273 | 188 | 69.5 | Plus |
| CG34220-PA | 726 | CG34220-PA | 124..175 | 219..270 | 188 | 73.1 | Plus |
| CG34220-PA | 726 | CG34220-PA | 125..176 | 219..270 | 188 | 73.1 | Plus |
| CG34220-PA | 726 | CG34220-PA | 126..177 | 219..270 | 188 | 73.1 | Plus |
| CG34220-PA | 726 | CG34220-PA | 127..178 | 219..270 | 188 | 73.1 | Plus |
| CG34220-PA | 726 | CG34220-PA | 128..179 | 219..270 | 188 | 73.1 | Plus |
| CG34220-PA | 726 | CG34220-PA | 129..180 | 219..270 | 188 | 73.1 | Plus |
| CG34220-PA | 726 | CG34220-PA | 130..181 | 219..270 | 188 | 73.1 | Plus |
| CG34220-PA | 726 | CG34220-PA | 131..182 | 219..270 | 188 | 73.1 | Plus |
| CG34220-PA | 726 | CG34220-PA | 132..183 | 219..270 | 188 | 73.1 | Plus |
| CG34220-PA | 726 | CG34220-PA | 133..184 | 219..270 | 188 | 73.1 | Plus |
| CG34220-PA | 726 | CG34220-PA | 134..185 | 219..270 | 188 | 73.1 | Plus |
| CG34220-PA | 726 | CG34220-PA | 135..186 | 219..270 | 188 | 73.1 | Plus |
| CG34220-PA | 726 | CG34220-PA | 146..197 | 222..273 | 187 | 73.1 | Plus |
| CG34220-PA | 726 | CG34220-PA | 305..356 | 219..270 | 187 | 73.1 | Plus |
| CG34220-PA | 726 | CG34220-PA | 313..368 | 219..274 | 187 | 67.9 | Plus |
| CG43798-PA | 213 | CG43798-PA | 127..204 | 214..283 | 186 | 59 | Plus |
| CG34220-PA | 726 | CG34220-PA | 265..327 | 215..270 | 185 | 65.1 | Plus |
| CG34220-PA | 726 | CG34220-PA | 300..351 | 219..270 | 184 | 71.2 | Plus |
| CG34220-PA | 726 | CG34220-PA | 301..352 | 219..270 | 184 | 71.2 | Plus |
| CG34220-PA | 726 | CG34220-PA | 303..354 | 219..270 | 184 | 71.2 | Plus |
| CG34220-PA | 726 | CG34220-PA | 304..355 | 219..270 | 184 | 71.2 | Plus |
| CG34220-PA | 726 | CG34220-PA | 426..482 | 216..274 | 184 | 66.1 | Plus |
| CG34220-PA | 726 | CG34220-PA | 97..151 | 219..270 | 182 | 72.7 | Plus |
| CG34220-PA | 726 | CG34220-PA | 142..197 | 219..274 | 182 | 66.1 | Plus |
| vsg-PC | 183 | CG16707-PC | 11..121 | 180..273 | 180 | 43 | Plus |
