BO29174.complete Sequence
2335 bp assembled on 2011-09-19
GenBank Submission: KX799056
> BO29174.complete
GAAGTTATCAGTCGACATGCGCGCCACCATCGAGTTCGAGGAGTGCCTGA
AGGATTCTCCCAGATTCAGACAATTTGTTTCCAAGGAGGAGAGCGACATC
GAGCACTTGGAGCAGCGCTTGGAGAAAATCATCAAGCTGTGCAATGTGGC
CGTGGACTCGGGCAAGGAGTATGTCAAGAACCAGAGCGCCTTTGCCATGT
CCCTGTGGGATCTACAACAGCACTTTCTCGACAATAAGAACGCGCACAAT
GCGCTGGGCAAGCTGATTCACTGCTTCCAGGAGATGAACAAGTTCCACAC
CATACTCTTGGATCAGGCTAGCCGCACGGTGCTTAAAAATCTCAGTGTGT
TCGTGAAGGACGACATTAACCAGGTGAAGGACTATAAGGGACATTTTCTC
AAGGTTTCCGAAGGCTATGACAATGCGCTGATTAAAAACGCTCAGGCCAG
CAAAAACCGACCGCAGGAGATGCAGGAGGCTGCCAATATCCTTTCTGCCT
CGAAATCGTGCTTCCAACACACCGCTCTGGATTATGTCAACTATATAACG
CTAGCGCAGGCTCGCAAGGTCCCCTCAATACTATCCACGCTGTTGGATTA
CTATCAGGCGTGCGTGACCTATTACCACCAGGGCTTCGATCTGTGCAACG
ACTTCGACGAGTTCTTTAAGAATATCAGCGAGGATTTGAACGCTTTGCGC
GGTGACTATCAGCAGCTGGAGAAGGCCATGCAGAATCGCCATATGAGCGT
TAATCGCTACTGCGACTCGAACACCAATAGCACGTCCAACAAGATCGAGG
GCTACCTATTCAAGAAGAAGTCCAAGGGCTTCAAGACCTGGTGCCGACGA
TGGTTCTACCTCAGCGACAACCAGCTCGTATATAGAAAACGCAGCAACGA
GGACTCGTTCTCGGTCATGGAGGAGGATCTGCGCATCTGCAGCGTGCGCC
CGGTAAACGAGGGTGACCGCCGTTTCTGCTTCGAGGTCATCTCGCCGACC
AAATCTCACATCCTGCAGGCTGACTCCGCTGACATGCTTTCCCTGTGGAT
TTCCGCGCTACAGCACAGCATCGGTGCTGCCATCCAGCATGACTCCACGC
ATCACTCGCGACCACAATCGACGAACGCACCCAATAATTCGCTGCCCGCA
AAGCGTAGAATCCACTGGGAAGAGTTCCTGAAGATACCGGGCAACGCATA
TTGTTGCGATTGCAGGAGCCCCGAACCACGCTGGGCCTCCATTAACTTGG
GCATCACCCTGTGCATCGAGTGCTCCGGAGTGCACAGAAGCCTGGGTGTG
CACTACAGCAAGGTGCGTTCCCTGACGCTGGATGCCTGGGAGTCGGAGAA
CGTGAAGGTAATGATGGAGCTCGGCAACGAGGTGGTTAACCGCATCTATG
AGGCACGCATCGGCGATGATTGTGGGCTCAAAAAGCCCACGGAGCAGTGC
GAGATCGGAGTGCGCGAGGCTTGGATCAAGGCGAAGTACGTGGAGCGGCG
GTTCGTCTGCGGTATGCCCAAACCGCAGGAGCTGCTGGCCAGCGAGACAG
CCGAAGTGCTGAGCATAGACAGTGGCGGCGTGGTAGAGGACGGCGAGAGT
GGAGGCAGTGGTATCGCTAAGCGAGCTACTCTGTCGCTGGGCGGCACGCG
AAAGTGGGCGGTGAAGAAACTTCGACGAAGGCAGAAGCAGCGCTCGATCC
CAAAAACGTTGAGCGATGATCCGAGCATCTATAACACAGCCAAAACCGGC
GACGAGTTGGAAGATGACGATGATGATGAATCCATCAACATTCCCTCGAT
GTCACTAAGCATTTCACGCGACGATTTGCTTGTGATCGGCGATGACCTGG
CTCTTGACAGACTAGAGACTCCCGGCATTCTGGGCAGCGATCAAGAGAGC
ACCGATGGCGAGTCAGATGCGGAGTCGCCAGAGGAACTGCCCTTCTCCCA
GCTAGACGCCAATCAATTGCTGTACATGGCTTCGGTGGTGCACAATCTAC
CAGTGATGTGCATGGCCTTCGCATTGGGTGCCGACAAGATGTGGAAAAAT
CCCCAAGACCGGCAACGATCGTTTCTGCACCAGGCCGTCATTTCCGGCTC
CGTGATGGCCTGCGAGTTTTTGCTACTAAACGGAGCCGCCATCGATGCTG
TGGACGAGATGGGCTACAGCGCCCTGCACATATCAACGGCCAAGGGTCAC
ATCGCCCAAGTGTATTTGCTGTTGAAGCATAAAGCTGCATACGACCTCTC
CTCCAGTGACGGAAAGAAGGCTCTGGACATTGCAGTGGACCAGGAAAACG
CAGACATTGTAACGCTGGCAAGCTTTCTAGACCAT
BO29174.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:12:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CenB1A-RA | 2487 | CG6742-PA | 1..2300 | 17..2316 | 11500 | 100 | Plus |
| CenB1A-RB | 1797 | CG6742-PB | 1..1610 | 728..2316 | 7700 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CenB1A-RA | 3464 | CG6742-RA | 390..2689 | 17..2316 | 11500 | 100 | Plus |
| CenB1A-RB | 2565 | CG6742-RB | 41..1790 | 588..2316 | 8400 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23122233..23123388 | 1162..2317 | 5780 | 100 | Plus |
| 3R | 32079331 | 3R | 23121336..23121632 | 589..885 | 1485 | 100 | Plus |
| 3R | 32079331 | 3R | 23120611..23120782 | 275..446 | 860 | 100 | Plus |
| 3R | 32079331 | 3R | 23122013..23122171 | 1003..1161 | 795 | 100 | Plus |
| 3R | 32079331 | 3R | 23120839..23120985 | 443..589 | 735 | 100 | Plus |
| 3R | 32079331 | 3R | 23120264..23120383 | 67..186 | 600 | 100 | Plus |
| 3R | 32079331 | 3R | 23121826..23121944 | 884..1002 | 595 | 100 | Plus |
| 3R | 32079331 | 3R | 23120459..23120555 | 185..281 | 485 | 100 | Plus |
| 3R | 32079331 | 3R | 23118789..23118841 | 17..69 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:12:51 has no hits.
BO29174.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:51 Download gff for
BO29174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cenB1A-RC | 387..2687 | 17..2319 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:48 Download gff for
BO29174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CenB1A-RC | 390..2690 | 17..2319 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:18 Download gff for
BO29174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CenB1A-RA | 390..2691 | 17..2319 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:18 Download gff for
BO29174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23121337..23121632 | 590..885 | 100 | -> | Plus |
| 3R | 23121828..23121944 | 886..1002 | 100 | -> | Plus |
| 3R | 23122013..23122171 | 1003..1161 | 100 | -> | Plus |
| 3R | 23118789..23118841 | 17..69 | 100 | -> | Plus |
| 3R | 23120267..23120383 | 70..186 | 100 | -> | Plus |
| 3R | 23120461..23120554 | 187..280 | 100 | -> | Plus |
| 3R | 23120617..23120781 | 281..445 | 100 | -> | Plus |
| 3R | 23120842..23120985 | 446..589 | 100 | -> | Plus |
| 3R | 23122233..23123388 | 1162..2319 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:48 Download gff for
BO29174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18944511..18944563 | 17..69 | 100 | -> | Plus |
| arm_3R | 18945989..18946105 | 70..186 | 100 | -> | Plus |
| arm_3R | 18946183..18946276 | 187..280 | 100 | -> | Plus |
| arm_3R | 18946339..18946503 | 281..445 | 100 | -> | Plus |
| arm_3R | 18946564..18946707 | 446..589 | 100 | -> | Plus |
| arm_3R | 18947059..18947354 | 590..885 | 100 | -> | Plus |
| arm_3R | 18947550..18947666 | 886..1002 | 100 | -> | Plus |
| arm_3R | 18947735..18947893 | 1003..1161 | 100 | -> | Plus |
| arm_3R | 18947955..18949110 | 1162..2319 | 99 | | Plus |
BO29174.pep Sequence
Translation from 16 to 2335
> BO29174.pep
MRATIEFEECLKDSPRFRQFVSKEESDIEHLEQRLEKIIKLCNVAVDSGK
EYVKNQSAFAMSLWDLQQHFLDNKNAHNALGKLIHCFQEMNKFHTILLDQ
ASRTVLKNLSVFVKDDINQVKDYKGHFLKVSEGYDNALIKNAQASKNRPQ
EMQEAANILSASKSCFQHTALDYVNYITLAQARKVPSILSTLLDYYQACV
TYYHQGFDLCNDFDEFFKNISEDLNALRGDYQQLEKAMQNRHMSVNRYCD
SNTNSTSNKIEGYLFKKKSKGFKTWCRRWFYLSDNQLVYRKRSNEDSFSV
MEEDLRICSVRPVNEGDRRFCFEVISPTKSHILQADSADMLSLWISALQH
SIGAAIQHDSTHHSRPQSTNAPNNSLPAKRRIHWEEFLKIPGNAYCCDCR
SPEPRWASINLGITLCIECSGVHRSLGVHYSKVRSLTLDAWESENVKVMM
ELGNEVVNRIYEARIGDDCGLKKPTEQCEIGVREAWIKAKYVERRFVCGM
PKPQELLASETAEVLSIDSGGVVEDGESGGSGIAKRATLSLGGTRKWAVK
KLRRRQKQRSIPKTLSDDPSIYNTAKTGDELEDDDDDESINIPSMSLSIS
RDDLLVIGDDLALDRLETPGILGSDQESTDGESDAESPEELPFSQLDANQ
LLYMASVVHNLPVMCMAFALGADKMWKNPQDRQRSFLHQAVISGSVMACE
FLLLNGAAIDAVDEMGYSALHISTAKGHIAQVYLLLKHKAAYDLSSSDGK
KALDIAVDQENADIVTLASFLDH
BO29174.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:04:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CenB1A-PA | 828 | CG6742-PA | 1..767 | 1..767 | 4003 | 100 | Plus |
| CenB1A-PB | 598 | CG6742-PB | 1..537 | 238..767 | 2751 | 98.7 | Plus |
| Asap-PC | 1127 | CG30372-PC | 32..540 | 15..497 | 340 | 24 | Plus |
| Asap-PD | 1143 | CG30372-PD | 32..540 | 15..497 | 340 | 24 | Plus |
| Asap-PB | 1155 | CG30372-PB | 32..540 | 15..497 | 340 | 24 | Plus |
