BO29179.complete Sequence
2341 bp assembled on 2011-09-19
GenBank Submission: KX797368
> BO29179.complete
GAAGTTATCAGTCGACATGACGTGCAGCAGGATGTGGATCAGGAGTCGCT
GGCTGGGCCTGCTGCTCCACTATTGGCTGGTCGTGGTTACGCAAGGCGGT
GGCGTACGTCCGCTTTACGGACTCCATTCCGACGAACTGGTGGCGGGTGA
GGGGCAGTTGGTGGTGCCACGACGCGTTCATCCCGATGGTGCGTTTATGA
CCCACCAATTGGAGTACGCACACGAACTGGATCATCGGCGGCATCGGCAG
AGGCGCAGCCTGAACTCGGAACACGATACCCAGGCGGCGGACCTGCATCT
GCTGTTGCCGCTGGCGAACGAGACACTGCATCTGGAGCTTATGGCGCACA
GCTACTTTCTGGCCCCGAATCTGGTGGTGGAGCGCCACCGGCGGGATCTG
CGCACTCGGTCACCGTTGACAACGCGGCACCTCAACTGTCACTTCCATGG
AAAGGTGCGCGGCCAACCGGCCACCAATGTGGCCATCTCCACATGCGCCG
GACTGGTGGGTCACATCCGGACGGCAGGCAATGAGTACTTCATTGAGCCC
TCGAAGGAGCACGAGCCGCATCCGGTCAACGGGCATCCGCACGTGGTCTT
CCAGCGCTCCTCCGTCAAACCGAAGCATTCGTTGCGAAAGCGAAACAAGC
GCAAGCGGGGCGGCAAATCGGGATCCGGAGCCGAGGTCAGCAATTGCGGC
ACGCGGGAGCCACGCCGTCGAATGGAGACGAGACTGGAGTGGCAGGCCAG
GGGCAAGGTGAAGGTCCAGGGAGGCCGTCAAATTAGGCGCCACCATCACC
ACCACCACCATCATCATCACAAGCACAAGTACCGCCATCATCAGCAGAAA
ATCAGCAGAGTTCCGCACACCAAGTTCAAGTACGAGACGCAGTTCCAAAC
GGAGCCGGATCACGCAGAGATTCCCCGGCGCAGGCGATCCATCAGCAGTC
CACGGCATGTGGAGACGCTCATCGTGGCCGATGCCACCATGTCGGCGTTT
CACAGGGACCTCAACGGCTATCTGCTGACCATCATGAACATGGTGTCCGC
ATTGTACAAGGATCCCAGCATTGGCAACTCCATCGAGATCGTTGTGGTGC
GCATTATCCAACTGGACGAGGAGGAGTCCCAGCTCCAGCTGAATCTCACG
CAGAATGCGCAGAAGAACTTGGATCGGTTCTGCAGTTGGCAGCACAAACT
GAACAAGGGCAGCGAAAAGGATCCGCATCACCATGACGTGGCCATTCTCA
TCACGCGGAAGAACATCTGCGCCAACAACTGCATGACTCTCGGCCTGGCC
AACGTGGGTGGCATGTGCAAGCCGAAGCAATCGTGCAGCGTGAACGAGGA
CAATGGCATCATGCTCTCGCACACCATCACCCATGAACTGGGCCACAACT
TCGGGATGTTCCACGATACGGCGAAGATCGGCTGCCATCCGCGCGTGGGT
CCCATTGTGCACATCATGACGCCCACTTTTGGGGCGGACACCCTGCAGGT
TTGCTGGTCGAACTGCAGCCGCAAGTATATCACACATTTCCTGGATCAGG
GATTGGGCGAGTGCCTGGACGATCCGCCGACGCCCTTGGATGAGTACAAC
TACACGGGCGAGCTGCCGGGCATGCGATACAATGCGAGGGGCCAGTGCCG
CCTGCAGTTCAACTTGACCACGGACAGCGAGGTGGGCGCCTGTTCCGCCC
CCCACGAATTCTGCTCGACGCTGTGGTGCAAGGTCAACGGCGAGTGCGTC
ACCCACATGCGGCCCACAGCGCCGGGCACATTGTGCGGTCGGAACAAGTG
GTGCCAGAACGGCAAGTGCGTCCGACGCGAGGAGCTGGCGGCGGTCAACG
GGGGATGGGGCGATTGGAGCGAGTGGAGCGAGTGCTCGCGAAGCTGCGGC
GGCGGCGTGTCCACGCAGCAGCGGGAATGCGACAATCCGGTGCCGGCCAA
TGGCGGTGTCTTCTGCATTGGCGAACGGAAGCGGTACAAGATTTGCCGGA
AGCGGCCGTGTCCGGCGGAGGAGCCCAGTTTCCGGGCGCAGCAATGCGCT
CGGTTCGATAATGTCAGCTACCAGGGTGCCACCTACAAGTGGCTGCCCTT
CTTCGATAAGAATAATCCCTGCAAGCTGTTCTGCAGCGATGTGGACGACA
CGATAATCGCCAACTGGGGCGCCACGGTGCTGGACGGGACACCCTGCACC
TTGGGCACGAACAACATGTGCATCGACGGCATCTGCAAGTTGGTTGCGAT
TGGATCGTCGACTCGGAGGTGCAGGACGATCGGTGCGGTGTCTGCGGCGG
TTCTGGCGATCAGTGCCAGCCGGGCAAGCTTTCTAGACCAT
BO29179.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:15:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4096-RC | 2310 | CG4096-PC | 1..2307 | 17..2323 | 11535 | 100 | Plus |
| CG4096-RB | 3072 | CG4096-PB | 1..2311 | 17..2323 | 11460 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4096-RC | 3372 | CG4096-RC | 185..2492 | 16..2323 | 11540 | 100 | Plus |
| CG4096-RB | 3920 | CG4096-RB | 729..3040 | 16..2323 | 11465 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5706745..5707314 | 1546..2115 | 2835 | 99.8 | Plus |
| X | 23542271 | X | 5703828..5704393 | 624..1189 | 2815 | 99.8 | Plus |
| X | 23542271 | X | 5703115..5703607 | 16..508 | 2465 | 100 | Plus |
| X | 23542271 | X | 5706505..5706655 | 1395..1545 | 740 | 99.3 | Plus |
| X | 23542271 | X | 5707373..5707500 | 2112..2239 | 640 | 100 | Plus |
| X | 23542271 | X | 5703655..5703775 | 505..625 | 605 | 100 | Plus |
| X | 23542271 | X | 5704607..5704724 | 1281..1398 | 575 | 99.2 | Plus |
| X | 23542271 | X | 5704445..5704546 | 1184..1285 | 510 | 100 | Plus |
| X | 23542271 | X | 5707558..5707644 | 2237..2323 | 435 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 08:14:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2448..2506 | 791..849 | 115 | 66.1 | Plus |
BO29179.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:52 Download gff for
BO29179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4096-RC | 186..2492 | 17..2325 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:05 Download gff for
BO29179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4096-RC | 186..2492 | 17..2325 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:58 Download gff for
BO29179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4096-RC | 186..2492 | 17..2325 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:58 Download gff for
BO29179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5703116..5703604 | 17..505 | 100 | -> | Plus |
| X | 5703656..5703775 | 506..625 | 100 | -> | Plus |
| X | 5703830..5704389 | 626..1185 | 100 | -> | Plus |
| X | 5704447..5704545 | 1186..1284 | 100 | -> | Plus |
| X | 5704611..5704724 | 1285..1398 | 100 | -> | Plus |
| X | 5706509..5706655 | 1399..1545 | 100 | -> | Plus |
| X | 5706745..5707310 | 1546..2111 | 100 | -> | Plus |
| X | 5707373..5707500 | 2112..2239 | 100 | -> | Plus |
| X | 5707561..5707644 | 2240..2325 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:05 Download gff for
BO29179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5598644..5598757 | 1285..1398 | 100 | -> | Plus |
| arm_X | 5600542..5600688 | 1399..1545 | 100 | -> | Plus |
| arm_X | 5597149..5597637 | 17..505 | 100 | -> | Plus |
| arm_X | 5597689..5597808 | 506..625 | 100 | -> | Plus |
| arm_X | 5597863..5598422 | 626..1185 | 100 | -> | Plus |
| arm_X | 5598480..5598578 | 1186..1284 | 100 | -> | Plus |
| arm_X | 5600778..5601343 | 1546..2111 | 100 | -> | Plus |
| arm_X | 5601406..5601533 | 2112..2239 | 100 | -> | Plus |
| arm_X | 5601594..5601677 | 2240..2325 | 97 | | Plus |
BO29179.pep Sequence
Translation from 16 to 2341
> BO29179.pep
MTCSRMWIRSRWLGLLLHYWLVVVTQGGGVRPLYGLHSDELVAGEGQLVV
PRRVHPDGAFMTHQLEYAHELDHRRHRQRRSLNSEHDTQAADLHLLLPLA
NETLHLELMAHSYFLAPNLVVERHRRDLRTRSPLTTRHLNCHFHGKVRGQ
PATNVAISTCAGLVGHIRTAGNEYFIEPSKEHEPHPVNGHPHVVFQRSSV
KPKHSLRKRNKRKRGGKSGSGAEVSNCGTREPRRRMETRLEWQARGKVKV
QGGRQIRRHHHHHHHHHHKHKYRHHQQKISRVPHTKFKYETQFQTEPDHA
EIPRRRRSISSPRHVETLIVADATMSAFHRDLNGYLLTIMNMVSALYKDP
SIGNSIEIVVVRIIQLDEEESQLQLNLTQNAQKNLDRFCSWQHKLNKGSE
KDPHHHDVAILITRKNICANNCMTLGLANVGGMCKPKQSCSVNEDNGIML
SHTITHELGHNFGMFHDTAKIGCHPRVGPIVHIMTPTFGADTLQVCWSNC
SRKYITHFLDQGLGECLDDPPTPLDEYNYTGELPGMRYNARGQCRLQFNL
TTDSEVGACSAPHEFCSTLWCKVNGECVTHMRPTAPGTLCGRNKWCQNGK
CVRREELAAVNGGWGDWSEWSECSRSCGGGVSTQQRECDNPVPANGGVFC
IGERKRYKICRKRPCPAEEPSFRAQQCARFDNVSYQGATYKWLPFFDKNN
PCKLFCSDVDDTIIANWGATVLDGTPCTLGTNNMCIDGICKLVAIGSSTR
RCRTIGAVSAAVLAISASRASFLDH
BO29179.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:04:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4096-PC | 769 | CG4096-PC | 1..769 | 1..769 | 4239 | 100 | Plus |
| CG4096-PB | 1023 | CG4096-PB | 1..743 | 1..743 | 4114 | 99.9 | Plus |
| AdamTS-A-PE | 1537 | CG14869-PE | 154..733 | 93..741 | 729 | 31.4 | Plus |
| AdamTS-A-PC | 1585 | CG14869-PC | 202..781 | 93..741 | 729 | 31.4 | Plus |
| AdamTS-A-PB | 1688 | CG14869-PB | 305..884 | 93..741 | 729 | 31.4 | Plus |
