BO29180.complete Sequence
1714 bp assembled on 2011-09-19
GenBank Submission: KX798734
> BO29180.complete
GAAGTTATCAGTCGACATGGCCAAGGACGAGGAGGATGATCTGCTGCCCG
ACAAGGATGCGGCCAAGGGCTTCTATGCCAAATACGAGCCCAAGGAGATT
CTGGGCAGGGGCATCAGTTCGACCGTGAGGCGATGTATCGAAAAGGAGAC
GGGCAAGGAGTTTGCCGCCAAGATCATCGACTTGGGCGCCACCACAGAGT
CAGGCGAGACGAATCCATATCACATGCTGGAAGCAACCAGACAAGAAATC
TCAATACTGCGCCAGGTCATGGGGCATCCCTACATAATTGATCTGCAGGA
TGTGTTCGAGTCAGATGCATTTGTTTTCCTCGTCTTCGAGCTGTGTCCCA
AAGGTGAACTCTTCGACTATCTGACCTCTGTGGTGACGCTATCCGAGAAG
AAGACGCGCACCATTATGCGACAAATCTTTGAGGGCGTCGAGTACATACA
CGCGAAGAGCATTGTCCATCGGGATCTTAAGCCCGAGAATATCTTGCTGG
ACGAGAACCACAACGTTAAGATCACGGATTTTGGCTTCGCCAAGCAGTTG
CAAGAGGGCGAGAAACTTACAAATCTGTGCGGAACGCCGGGTTATTTGGC
TCCCGAAACGCTCAAGTGCAACATGTTCGAGGGATCCCCCGGCTACTCGC
AGGAAGTCGACATATGGGCCTGTGGCGTGATTATGTTTACGCTGCTCGTC
GGTTGTCCACCTTTCTGGCACCGCAAGCAGATGGTCATGCTGCGGAATAT
CATGGAGGGCAAGTACAGCTTCACCTCGCCGGAGTGGGCTGATATTTCAG
AGGATCCCAAGGATCTGATACGCAAATGTCTAGTCGTTGATCCTTCGCAA
CGTATAACCGTCAAGGAAGTATTAAGACATCCATTCTTCAACCAAATGGT
GTTAATGGGTGATCGCCGGCATCCGGCCCCGCCCATCGCGCCCGCCCAAA
CGAACAGCAGGCATCTGCTGCAACCCGAGGCGTCATCGTATCGCTTTGGT
CAGCTGAACAGTAGTTGCGCCGGTGCCCCCAATTATCTGTACTGTGCGCC
ACAGAGCTCCTACTCGTCGAATCGAATGCGCGACGGGGCGCTGGACGATG
CGGGTGCCAGTGCTGCATCCGCCACCTGCCATGTCATGTCGCCATCCAAC
GCCTCCAATTCCTACGCCACCAACACCACAGCCAACACCTCGAACTCGGC
CTTGGCATCCGCCTCCTCCCACAAAACGCTCACGGCGATGGTCTACTATC
AGCAGCAACCGCAGCAGCATCAGACGCAGCAGCAGCAGCAACAGTACCAG
CAGCAACAGACGACACAGCTGCCGGTGCAGCTGCAGTTGCAGCATCCACT
ATTGCAGACCGGTGGCGATGGCAAGCAATCGGTGTATGCACCTCCTACAG
TGCAGCTGCGCAAACAAAGTCGCTTCAACGCGCGCAAAAAGTTCCAATTC
GCCATACTCGTGATACGGGCCATCATTCGGATACGGCGCCTACGCTTCAC
CGCCGAGCCGCTGCACGTTGAGGAGGCCATCCGGGATCCGTATCGCGTCA
AGGTTCTGCGCAAGGTCATCGATGGCTGTGCCTTCCGTGTCTACGGGCAT
TGGGTCAAGAAGGGTGAGGGCCAGAATCGGGCCGCCCTCTTCGAGAATAC
TCCCCGCACGGAGCTCCACGCGCTCTACATCAACAATCTCAGCCGAGCAA
GCTTTCTAGACCAT
BO29180.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:18:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PhKgamma-RE | 1683 | CG1830-PE | 1..1680 | 17..1696 | 8400 | 100 | Plus |
| PhKgamma-RD | 1683 | CG1830-PD | 1..1680 | 17..1696 | 8400 | 100 | Plus |
| PhKgamma-RH | 1260 | CG1830-PH | 1..887 | 17..903 | 4420 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:18:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PhKgamma-RE | 3111 | CG1830-RE | 678..2357 | 17..1696 | 8400 | 100 | Plus |
| PhKgamma-RD | 2723 | CG1830-RD | 290..1969 | 17..1696 | 8400 | 100 | Plus |
| PhKgamma-RH | 2522 | CG1830-RH | 512..1398 | 17..903 | 4420 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:18:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11700620..11701127 | 898..1405 | 2540 | 100 | Plus |
| X | 23542271 | X | 11697311..11697595 | 288..572 | 1425 | 100 | Plus |
| X | 23542271 | X | 11697063..11697244 | 106..287 | 910 | 100 | Plus |
| X | 23542271 | X | 11703288..11703450 | 1404..1566 | 815 | 100 | Plus |
| X | 23542271 | X | 11698299..11698435 | 664..800 | 685 | 100 | Plus |
| X | 23542271 | X | 11703507..11703640 | 1563..1696 | 670 | 100 | Plus |
| X | 23542271 | X | 11698493..11698599 | 794..900 | 520 | 99.1 | Plus |
| X | 23542271 | X | 11696449..11696541 | 17..109 | 465 | 100 | Plus |
| X | 23542271 | X | 11697661..11697751 | 573..663 | 455 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 08:18:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dm88 | 4558 | Dm88 DM88 4558bp | 2847..2898 | 1564..1615 | 116 | 69.2 | Plus |
| Helena | 1317 | Helena HEL 1317bp | 923..968 | 363..318 | 113 | 71.7 | Minus |
BO29180.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:53 Download gff for
BO29180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PhKgamma-RE | 703..2382 | 17..1698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:34 Download gff for
BO29180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PhKgamma-RD | 290..1969 | 17..1698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:36 Download gff for
BO29180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PhKgamma-RD | 290..1969 | 17..1698 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:36 Download gff for
BO29180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11698299..11698435 | 664..800 | 100 | -> | Plus |
| X | 11698500..11698597 | 801..898 | 100 | -> | Plus |
| X | 11697311..11697595 | 288..572 | 100 | -> | Plus |
| X | 11697661..11697751 | 573..663 | 100 | -> | Plus |
| X | 11696449..11696540 | 17..108 | 100 | -> | Plus |
| X | 11697066..11697244 | 109..287 | 100 | -> | Plus |
| X | 11700621..11701127 | 899..1405 | 100 | -> | Plus |
| X | 11703290..11703448 | 1406..1564 | 100 | -> | Plus |
| X | 11703509..11703640 | 1565..1698 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:34 Download gff for
BO29180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11590482..11590573 | 17..108 | 100 | -> | Plus |
| arm_X | 11591099..11591277 | 109..287 | 100 | -> | Plus |
| arm_X | 11591344..11591628 | 288..572 | 100 | -> | Plus |
| arm_X | 11591694..11591784 | 573..663 | 100 | -> | Plus |
| arm_X | 11592332..11592468 | 664..800 | 100 | -> | Plus |
| arm_X | 11592533..11592630 | 801..898 | 100 | -> | Plus |
| arm_X | 11594654..11595160 | 899..1405 | 100 | -> | Plus |
| arm_X | 11597323..11597481 | 1406..1564 | 100 | -> | Plus |
| arm_X | 11597542..11597673 | 1565..1698 | 98 | | Plus |
BO29180.pep Sequence
Translation from 16 to 1714
> BO29180.pep
MAKDEEDDLLPDKDAAKGFYAKYEPKEILGRGISSTVRRCIEKETGKEFA
AKIIDLGATTESGETNPYHMLEATRQEISILRQVMGHPYIIDLQDVFESD
AFVFLVFELCPKGELFDYLTSVVTLSEKKTRTIMRQIFEGVEYIHAKSIV
HRDLKPENILLDENHNVKITDFGFAKQLQEGEKLTNLCGTPGYLAPETLK
CNMFEGSPGYSQEVDIWACGVIMFTLLVGCPPFWHRKQMVMLRNIMEGKY
SFTSPEWADISEDPKDLIRKCLVVDPSQRITVKEVLRHPFFNQMVLMGDR
RHPAPPIAPAQTNSRHLLQPEASSYRFGQLNSSCAGAPNYLYCAPQSSYS
SNRMRDGALDDAGASAASATCHVMSPSNASNSYATNTTANTSNSALASAS
SHKTLTAMVYYQQQPQQHQTQQQQQQYQQQQTTQLPVQLQLQHPLLQTGG
DGKQSVYAPPTVQLRKQSRFNARKKFQFAILVIRAIIRIRRLRFTAEPLH
VEEAIRDPYRVKVLRKVIDGCAFRVYGHWVKKGEGQNRAALFENTPRTEL
HALYINNLSRASFLDH
BO29180.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:04:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PhKgamma-PE | 560 | CG1830-PE | 1..560 | 1..560 | 2930 | 100 | Plus |
| PhKgamma-PD | 560 | CG1830-PD | 1..560 | 1..560 | 2930 | 100 | Plus |
| PhKgamma-PF | 391 | CG1830-PF | 1..295 | 1..295 | 1553 | 99.7 | Plus |
| PhKgamma-PH | 419 | CG1830-PH | 1..295 | 1..295 | 1553 | 99.7 | Plus |
| PhKgamma-PB | 419 | CG1830-PB | 1..295 | 1..295 | 1553 | 99.7 | Plus |
| PhKgamma-PF | 391 | CG1830-PF | 295..391 | 464..560 | 498 | 100 | Plus |
| PhKgamma-PH | 419 | CG1830-PH | 323..419 | 464..560 | 498 | 100 | Plus |
