Clone BO29182 Report

Search the DGRC for BO29182

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:291
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptCG13830-RC
Protein status:BO29182.pep: Imported from assembly
Sequenced Size:1921

Clone Sequence Records

BO29182.complete Sequence

1921 bp assembled on 2012-04-24

GenBank Submission: KX794345

> BO29182.complete
GAAGTTATCAGTCGACATGAAGCACTCGCCGCTGATTGCCAGCGCTTGTC
TGGCGCTGGTGTTGATGTCATCCAGCCTGATTGGCAGCACCGAGGCCAGA
AACAAGAAGAAGTACGTCGGCGAGACGGGCGGCGATTTCGAGTTTATCGA
TGAGATAAACAAAAACACGCAGAGCAACAAGAATCTGGGCGAGCACAAGC
GCTGGATACACGATCCCTCGAGTGACCTTTGCCGACCGCTGAACTGCAAG
AAGCGTGAAATCTGCCTGCTGGAGGACGAGTTCAGTGCCGTTTGCGTGTC
GAAGAAGGAGCTCCACAAGAATCGTGATGAGATAATCACCAAGGCCAAGT
ATTTGGAGGAGGAGGCCAAGCGGCGTGTCAACCAGCAGGACAATCAGGAC
AGCCAGGACGCGGAGGATATCAACAACGACGACGAGGATAACAGCAGCGA
TGGCGGCAGCAGCAACTCCAGCCCCACAGGCACCAACAATGCCCAGGCCA
GTGTCCAGGGAAATGAGGAGACCGACGACGAAGATAAGAGCCTAAGTCTG
GGCGACGACGACGAGTCCAAGGAGGATGATGTCTTCTACGAGAACAGTAT
CGCCGCCGGCGATAAGCAGCAGCAGCAACAGCAGCTATCCCAGCCTGCTG
CAGGACCTTCCGTTATTCAGCAGGACGACGACGAGGAGTTGGACAACTGC
AAGCCGTGTCCTGTGGCCAAGCCGACGTTCCTGTGCGGAGCCGACAACAG
GACCTACTCATCACTATGCAGATTGGATTATCACAATTGCATACATTCGA
CGTCCATACGGATCGCCTGCAAAGGATTCTGTCCCTGCAAGGAGATTGTC
GATGGAAAGCGGCTGCAGCGCATCTCGGGCTACAACAACAAGTACAACAA
GAAGATCAGCCTGGACCAGCAGCAGCAGCAGCAGCAACAACAACAACAGC
AGCAGCAGCAGCAGCAGGCCTACAAGGACAGCAACAACAACAACATCATG
ATGAACAGCGGCAACATAATGGGCGGCAACAACAACGACTTCAACACGAT
CATGAATGACAAAGAGGACAATAACCGGCACAACAACCACATCAATGCCC
AGTACACTTTCACGCCCGAGGAGATCAAATATGACAACAAGCACTACAAG
TACCTCAAGTACACGGCCTACAAGAAGGACTCCAAGTACCAGGAGGACAA
GCACAAGATGCGCAACTATAACGAGGTGGTCGAGAAGCAGCAGCAGAAGT
TCAATAAGAACAGCAACTTGAATGCCTATCCATCGAAATCGGCAGAGTGC
AAGCCGCAGCAACTGACGGCGATTGGCAACCGACTGCTGGACTGGTTCTC
GGTGATCATGGCGGACAGCAAGAAGCGGCGCCAGCACAGCCAGAAGTCAA
AGGCCCACTTCCCGCCCGCCTGCAAGACGGAGGCCAAGTGGATGTTCGGC
CACCTGGATCTGAATAACGACGGGCAGCTGTCGCTGCAGGAGATGTACGA
CCTGGAGCATGACCAGAACGAGCGTTGCATCAAGCCATTCATCGACACCT
GCGACTTGGACACGGATAGCTCGATCAACACACGGGAATGGTGCAGATGC
TTCGAGAAGACGGATCGTCCATGTGCCGCTGTGCGCCGGAGAATCGCCGG
CGACTTTGCAGGAGCCTACGCACCGGACTGCGACATCCAGGGATTCTACA
AGCCTACCCAGTGCCACAATTCCGTGGGAGTTTGCTGGTGCGTGGACAAG
CACGGAGTGGAGTTCGCCAACACACGCACACGCGGCAAACCCAATTGCGA
GTCCGTGGTTAATAATGCCGCATCGCTCACATCCGATGACGAGGACGAGG
GCGCCGATGACGAGGACAGCGCGGAGGGCAGTGCCGATCAGATGCTGGTC
TTCGCAAGCTTTCTAGACCAT

BO29182.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:00:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG13830-RD 1890 CG13830-PD 1..1887 17..1903 9435 100 Plus
CG13830-RC 1890 CG13830-PC 1..1887 17..1903 9435 100 Plus
CG13830-RE 1899 CG13830-PE 1..1896 17..1903 9310 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:00:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG13830-RD 4382 CG13830-RD 386..2273 16..1903 9440 100 Plus
CG13830-RC 2451 CG13830-RC 386..2273 16..1903 9440 100 Plus
CG13830-RE 2460 CG13830-RE 386..2282 16..1903 9315 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:00:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23075014..23075402 1662..1274 1945 100 Minus
3R 32079331 3R 23081349..23081718 693..324 1850 100 Minus
3R 32079331 3R 23075999..23076215 1058..842 1085 100 Minus
3R 32079331 3R 23076828..23076976 842..694 745 100 Minus
3R 32079331 3R 23073864..23074003 1799..1660 700 100 Minus
3R 32079331 3R 23112203..23112345 158..16 700 99.3 Minus
3R 32079331 3R 23075796..23075916 1178..1058 605 100 Minus
3R 32079331 3R 23072625..23072729 1903..1799 525 100 Minus
3R 32079331 3R 23081828..23081930 324..222 515 100 Minus
3R 32079331 3R 23075634..23075732 1274..1176 495 100 Minus
3R 32079331 3R 23082095..23082167 225..153 365 100 Minus
Blast to na_te.dros performed 2014-11-28 05:00:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2757..2990 857..1092 275 60.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2864..2995 919..1046 245 67.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2658 944..1313 234 57.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2577..2960 839..1224 189 55.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6774..6882 381..488 155 61.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2573..2850 392..657 154 56 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2467..2547 419..496 137 65.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6831 381..488 135 61.6 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 991..1058 615..682 133 66.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6831..6959 381..508 129 56.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6768 438..488 120 70.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6789 417..488 117 62.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6810 419..488 116 62.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6844 381..489 115 59.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6753..6881 381..505 115 57.3 Plus

BO29182.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:01:13 Download gff for BO29182.complete
Subject Subject Range Query Range Percent Splice Strand
CG13830-RD 372..2258 17..1905 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:52 Download gff for BO29182.complete
Subject Subject Range Query Range Percent Splice Strand
CG13830-RC 387..2273 17..1905 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:02:10 Download gff for BO29182.complete
Subject Subject Range Query Range Percent Splice Strand
CG13830-RC 387..2273 17..1905 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:02:10 Download gff for BO29182.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23073864..23074001 1662..1799 100 <- Minus
3R 23072623..23072728 1800..1905 98 <- Minus
3R 23075015..23075401 1275..1661 100 <- Minus
3R 23075634..23075730 1178..1274 100 <- Minus
3R 23075797..23075916 1058..1177 100 <- Minus
3R 23076000..23076214 843..1057 100 <- Minus
3R 23076828..23076976 694..842 100 <- Minus
3R 23081349..23081717 325..693 100 <- Minus
3R 23081828..23081930 222..324 100 <- Minus
3R 23082099..23082165 155..221 100 <- Minus
3R 23112207..23112344 17..154 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:52 Download gff for BO29182.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18901722..18901936 843..1057 100 <- Minus
arm_3R 18902550..18902698 694..842 100 <- Minus
arm_3R 18898345..18898450 1800..1905 98 <- Minus
arm_3R 18899586..18899723 1662..1799 100 <- Minus
arm_3R 18900737..18901123 1275..1661 100 <- Minus
arm_3R 18901356..18901452 1178..1274 100 <- Minus
arm_3R 18901519..18901638 1058..1177 100 <- Minus
arm_3R 18907071..18907439 325..693 100 <- Minus
arm_3R 18907550..18907652 222..324 100 <- Minus
arm_3R 18907821..18907887 155..221 100 <- Minus
arm_3R 18937929..18938066 17..154 100   Minus

BO29182.pep Sequence

Translation from 16 to 1921

> BO29182.pep
MKHSPLIASACLALVLMSSSLIGSTEARNKKKYVGETGGDFEFIDEINKN
TQSNKNLGEHKRWIHDPSSDLCRPLNCKKREICLLEDEFSAVCVSKKELH
KNRDEIITKAKYLEEEAKRRVNQQDNQDSQDAEDINNDDEDNSSDGGSSN
SSPTGTNNAQASVQGNEETDDEDKSLSLGDDDESKEDDVFYENSIAAGDK
QQQQQQLSQPAAGPSVIQQDDDEELDNCKPCPVAKPTFLCGADNRTYSSL
CRLDYHNCIHSTSIRIACKGFCPCKEIVDGKRLQRISGYNNKYNKKISLD
QQQQQQQQQQQQQQQQQAYKDSNNNNIMMNSGNIMGGNNNDFNTIMNDKE
DNNRHNNHINAQYTFTPEEIKYDNKHYKYLKYTAYKKDSKYQEDKHKMRN
YNEVVEKQQQKFNKNSNLNAYPSKSAECKPQQLTAIGNRLLDWFSVIMAD
SKKRRQHSQKSKAHFPPACKTEAKWMFGHLDLNNDGQLSLQEMYDLEHDQ
NERCIKPFIDTCDLDTDSSINTREWCRCFEKTDRPCAAVRRRIAGDFAGA
YAPDCDIQGFYKPTQCHNSVGVCWCVDKHGVEFANTRTRGKPNCESVVNN
AASLTSDDEDEGADDEDSAEGSADQMLVFASFLDH

BO29182.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:15:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13830-PD 629 CG13830-PD 1..629 1..629 3394 100 Plus
CG13830-PC 629 CG13830-PC 1..629 1..629 3394 100 Plus
CG13830-PE 632 CG13830-PE 1..632 1..629 3380 99.5 Plus