BO29183.complete Sequence
2836 bp assembled on 2011-10-14
GenBank Submission: KX794324
> BO29183.complete
GAAGTTATCAGTCGACATGGCAAGTTTACAAATTAGGATTGTACTTAGAA
GGGAGAGCAGAAAATCAAATTCCTGCATTGGCGGCAATCAATCGCCCACG
GGCACGCCGCGCCCCTTTCTGCGATCCAACACCCTTCCTCTGCGACAGCG
ACCCAGTCCGGCGGAGGTCCAATATGAAAGCTACGTGCAGGCCACGGTGG
CGGCCAATGCCAAGTCGCCGGTGGAGCAGCTGGAGAGCGCAAAGTCTCCA
GGTGCTCCGCCACCACCGCCTCCGAGGCGCCACCACCTGTTGGCCACCAC
GCCCACGGGAAAACCCACTTTCAAGGAGGATCGACCGCAGGAGAATGGTT
CCGTAAGCAGCAGCTCCCTGCAGTCGCCAGTCATCTCGGAAACCGGTCAG
ACTACGGCAGATGCACAAGCTCTGTTCCAGATACGAGAACAAATGGCCCT
GAGCCTGAGGCGTCTTAAGGATCTGGAGGAGCAGGTGAAAGTCATACCCG
ACATGGAGCTGGAACTTAATTCTCTTCGCTCGGAAAAGCAGAAATTGCTG
CGCAGAAACGAGGAGTTGATGCGAAGTCAGCGGCAGACGCCTTCGCCGCC
AAGTCCGGGACTCAAGACTGCCTCACCCGTGCAGTTCACTCCGCAAAGGA
TCAGTCCAGTGTCGCTGGAGAGCCTAGGAGCACGCATGCGCAGCAGTTCC
ACCTCGGCATCTCCATCTCCAAGCGTTGTCCGTCGAGATGTCTCCACTCA
AGCAGTGGTGCGACCACCTGCCACACGAGATGTGTCCGTTGGCCACCAGC
CCACCACGAGAAATGTTGGAGTTCAGCCGTCGGAAACTGTCTACTCCAAG
GAGGAGCTGGATAAGAAGGTGGAGCAGGCACTAACCAATGCACAAAAGCA
ACAATTGAGAAAGCTCATCTCTGTGGGCACCCAAATGTATGTGCCCCAGA
GGGACCAAAAAGATAGTGGAGTGCAAACCACACCGGAACGACCCAAACTC
AAGTACCATGTGGGAGTCACCGTGAAACCGGCCACAAGGGAGAACTTTAC
CAGTTGCAAGCCGGATGTGCGTCATGTGGGCAGCTCTGATGATCGCCTGG
ATGATGTGCTATGCGAAAAATGCGCCGTCAGCAAGAGAAGCGTGGCCTGC
GGTCCGGAAACTCCGGCGGAGAAGGTAAAACCTGCTCCCCAAATGCCCGG
ACGCAGCAACACCTTCAGTTTGGGCGAGAATGAGACCGTATCCGTGGTGC
GTAAGACAATTGGATGCCAGACGCCAGTTACCCTGGTTCTCAGTTCTGGA
AGTCAAACCACCACGGCTGTTGTTCGTTCCACCGGAGCCCAGGTTAATCC
ACAGCAACAGCACTCTGGCGTCCAGTGTGCAACGGAGCAGGTATCCCGAC
AGACTGATACCAAGGGACTGCAGCGACTCACTCGGAGTCAGACGAAGGCT
GAACAGGTCTCAGAGTCTGTGCCCCGCCCTACAACCCGTCACACAGCCAG
CAATACGGACAAGGTGGAGGAAGCGGAGCCGGCTAAGGTTCGCACAAGCC
ACTCCGCCTGCAACACGGAGGAGGTTCGCAAGAGGGATGTGGGCTGTGGC
GACATCGTCAAGCCACACATCTCCATTGCCTGTGCAGCCAACTACTGTGA
TTCCTGCAAGGAGGCCATCCAGGATCTGGCCAGGGGTTTCTCGAAGGCCA
GTCCCACGGCCACCAGAACGGGAGGAGCAGTGCGACGCTCCACGTCGGCG
GACTCGAGAATTCCGCGACCCAAGCACCTCTCCAGTCCGAGTCCGGTGCG
CAAAGAGTTCATGCGGCAGAACACCTACACGCTGGCCACGCCTTCGCCAA
CTCCAAGTCCACAGGTGGAAAGGAAGGCGCGATTGAGCTCCCTGCAAGAG
AAGCCACCGTCAGTGTCCAGTTTCCAGGCATCGGAGCCATTGCCCGAATC
CCAAAGCTTCATCCGTCAACCGCAGAAGGATTCATTGGATCTGAGTCTCT
TGGGCGAGGATGAGTTGATAGTCCGAGAGGAGAAGCGGGTGAGCATCAGC
TGGTCGCGCGATGCCTCACCAGCTCCGCTGATGACCTCCTCGGGCACTAC
CAAGTCCGAATCACCGGAACAGGAGCCGGCAATGAGCTCCTCAAGTGATT
CAAGTCCGCCCATCGACGTCCAGATTGCCCAGGGAGCGCGCAAGAAGTCC
AGCACTCCACTCAAATCTAGTCAGAGCGAGGGCTCCCAAGTGACCGTGAT
CGAACAGCCGGCCACCAAAGCCCAGCTCCACCAGTTGGCCCAGGCGGATT
CGGAGCCCCGAAAAAAAACCGAGTTGTCCCAGAGCCTTAAAGACGCCCTC
AAGATCATTAACGACTCGCTGCTGAAGAAGCTGGGCGCCAAACCCATATC
CTCGCAGAGTCTCAAGTCGGCCAAGGCGACCATTCAGGATCATTGGTTCA
CTAACTCCAGTACTGGCAAATCCGATCCCCATCAGGTTGAGGATTATCTA
GATTACTTTGAATCGCTGTCCATCCCATTGCTGGAGTACTGTGTCAACCT
GTCCGACAGTAATGGCAACACAGCCATGCACTATGCAGTCTCGCACGGCA
ACTTCGATGTGGTATCCATACTGCTGGATTCTAAGGTTTGCGATGTAAAC
CAAATGAATAACGCCGGATACACATCGGTGATGCTCGTATCGTTGGCCAA
GCTGAAGCAGCCCGCCCATCGGACAGTCGTCGAGCGACTGTTCAAGATGG
CCGATGTCAACATACGGGCCAAGAAGGTAGCACTGCCAGACCGCTTTGAT
GCTCGCTGTGTCGCATGGGCAAGCTTTCTAGACCAT
BO29183.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:57:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10249-RE | 2805 | CG10249-PE | 1..2802 | 17..2818 | 14010 | 100 | Plus |
| CG10249-RB | 3129 | CG10249-PB | 1..2798 | 17..2818 | 13915 | 99.9 | Plus |
| CG10249-RI | 3120 | CG10249-PI | 44..2789 | 69..2818 | 13655 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:57:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10249-RE | 3652 | CG10249-RE | 21..2823 | 16..2818 | 14015 | 100 | Plus |
| CG10249-RB | 3648 | CG10249-RB | 21..2819 | 16..2818 | 13920 | 99.9 | Plus |
| CG10249-RI | 4059 | CG10249-RI | 485..3230 | 69..2818 | 13655 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:57:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14904073..14905453 | 1887..507 | 6905 | 100 | Minus |
| 2R | 25286936 | 2R | 14905514..14905953 | 508..69 | 2200 | 100 | Minus |
| 2R | 25286936 | 2R | 14903136..14903566 | 2316..1886 | 2155 | 100 | Minus |
| 2R | 25286936 | 2R | 14902784..14903031 | 2564..2317 | 1240 | 100 | Minus |
| 2R | 25286936 | 2R | 14902507..14902723 | 2780..2564 | 1085 | 100 | Minus |
| 2R | 25286936 | 2R | 14906018..14906070 | 68..16 | 265 | 100 | Minus |
| 2R | 25286936 | 2R | 14902366..14902405 | 2818..2779 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:57:25 has no hits.
BO29183.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:57:37 Download gff for
BO29183.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10249-RE | 13..2814 | 17..2820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:42:01 Download gff for
BO29183.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10249-RE | 22..2823 | 17..2820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:46:55 Download gff for
BO29183.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10249-RE | 22..2823 | 17..2820 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:46:55 Download gff for
BO29183.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14902785..14903031 | 2317..2563 | 100 | <- | Minus |
| 2R | 14902364..14902403 | 2781..2820 | 95 | <- | Minus |
| 2R | 14902507..14902723 | 2564..2780 | 100 | <- | Minus |
| 2R | 14903136..14903564 | 1888..2316 | 100 | <- | Minus |
| 2R | 14904073..14905451 | 509..1887 | 100 | <- | Minus |
| 2R | 14905514..14905953 | 69..508 | 100 | <- | Minus |
| 2R | 14906018..14906069 | 17..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:42:01 Download gff for
BO29183.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10789869..10789908 | 2781..2820 | 95 | <- | Minus |
| arm_2R | 10790012..10790228 | 2564..2780 | 100 | <- | Minus |
| arm_2R | 10790290..10790536 | 2317..2563 | 100 | <- | Minus |
| arm_2R | 10790641..10791069 | 1888..2316 | 100 | <- | Minus |
| arm_2R | 10791578..10792956 | 509..1887 | 100 | <- | Minus |
| arm_2R | 10793019..10793458 | 69..508 | 100 | <- | Minus |
| arm_2R | 10793523..10793574 | 17..68 | 100 | | Minus |
BO29183.pep Sequence
Translation from 16 to 2836
> BO29183.pep
MASLQIRIVLRRESRKSNSCIGGNQSPTGTPRPFLRSNTLPLRQRPSPAE
VQYESYVQATVAANAKSPVEQLESAKSPGAPPPPPPRRHHLLATTPTGKP
TFKEDRPQENGSVSSSSLQSPVISETGQTTADAQALFQIREQMALSLRRL
KDLEEQVKVIPDMELELNSLRSEKQKLLRRNEELMRSQRQTPSPPSPGLK
TASPVQFTPQRISPVSLESLGARMRSSSTSASPSPSVVRRDVSTQAVVRP
PATRDVSVGHQPTTRNVGVQPSETVYSKEELDKKVEQALTNAQKQQLRKL
ISVGTQMYVPQRDQKDSGVQTTPERPKLKYHVGVTVKPATRENFTSCKPD
VRHVGSSDDRLDDVLCEKCAVSKRSVACGPETPAEKVKPAPQMPGRSNTF
SLGENETVSVVRKTIGCQTPVTLVLSSGSQTTTAVVRSTGAQVNPQQQHS
GVQCATEQVSRQTDTKGLQRLTRSQTKAEQVSESVPRPTTRHTASNTDKV
EEAEPAKVRTSHSACNTEEVRKRDVGCGDIVKPHISIACAANYCDSCKEA
IQDLARGFSKASPTATRTGGAVRRSTSADSRIPRPKHLSSPSPVRKEFMR
QNTYTLATPSPTPSPQVERKARLSSLQEKPPSVSSFQASEPLPESQSFIR
QPQKDSLDLSLLGEDELIVREEKRVSISWSRDASPAPLMTSSGTTKSESP
EQEPAMSSSSDSSPPIDVQIAQGARKKSSTPLKSSQSEGSQVTVIEQPAT
KAQLHQLAQADSEPRKKTELSQSLKDALKIINDSLLKKLGAKPISSQSLK
SAKATIQDHWFTNSSTGKSDPHQVEDYLDYFESLSIPLLEYCVNLSDSNG
NTAMHYAVSHGNFDVVSILLDSKVCDVNQMNNAGYTSVMLVSLAKLKQPA
HRTVVERLFKMADVNIRAKKVALPDRFDARCVAWASFLDH
BO29183.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:33:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10249-PE | 934 | CG10249-PE | 1..934 | 1..934 | 4731 | 100 | Plus |
| CG10249-PB | 1042 | CG10249-PB | 1..920 | 1..920 | 4652 | 100 | Plus |
| CG10249-PG | 1294 | CG10249-PG | 269..1172 | 17..920 | 4572 | 99.8 | Plus |
| CG10249-PD | 1339 | CG10249-PD | 314..1217 | 17..920 | 4572 | 99.8 | Plus |
| CG10249-PA | 1224 | CG10249-PA | 199..1102 | 17..920 | 4572 | 99.8 | Plus |
