BO29184.complete Sequence
2428 bp assembled on 2011-09-20
GenBank Submission: KX799658
> BO29184.complete
GAAGTTATCAGTCGACATGAATCTCCTACAAAGAATCGCAAATTGGGCCT
CAGACAATCGGGATGGCAATGTGGCAGATAAGTCAGCTGCTGATGCCGCT
AAACTCAACAGGAAGGAATCGTACAAGGCGCAGAGGAAGAACTACAGGCG
GGAGAAGAAACGAGTGGCCAGTGAGCTGATGAACTCCCTGCAGGATCCTG
CAGTTATAGTGCTGGCAGATTGGCTAAAGGTTCGTGGCACACTAAAGTCC
TGGACGAAACTGTGGTGCGTTCTGAAGCCTGGCCTACTGCTGATTTACAA
GAGCCAAAAGACGAAGAGCAGCCACTGGGTGGGCACGGTGATGCTCACCT
CATGCCAGGTGATCGAGCGCCCGAGCAAAAAGGATGGCTTCTGTTTCAAG
CTCTTCCATCCCCTGGAACAGTCCATTTGGGCGCCGCGCGGTCCTGACAA
GGAAACCATTGGTGCCGTGGTCCAGCCGTTGCCAACCGCTTACCTGATCT
TTCGAGCTCCCAGTCAGGCGGCCGGCAAGTGCTGGATGGATGCCCTGGAG
CTGTCCCTGAGATGTTCGGCCCTCCTGTTGCGTTCGAATAGCAGTACGGG
CACTGCTCCAACGTCCAGCTATATCGGCGAACCGCTGCCCGTCTCCCATG
AGACGCAGTGGTCGGAGGCGGACTACGAGAAGCACTTCAACGATCACGAT
TTGGACGCTGACAGCCAGAATGAAGCACCCAATGCCGTCATGTCTGGTCT
GGAGTCGGAATCCGAATCGGATCCGGCAGAGCCGGCGCAGGATGATGTCG
TTGATCAGCAGTGTGTGGAGACCTCGTATGTGCCCTTCACTGAGGAGGAG
TTTGGCGAGCAAGGGGAGCAGGTGCGACCGGGAATGGATTTGAGCAAGGT
AGTACTACCCACATTTATCCTGGAGCCCCGCTCATTCCTGGACAAGTTAT
CCGACTCGTATTACCATGCGGACTTGCTCTCTAAGGCCGTTCAGGAAGAT
GACGCGTTCACACGCATGAAGCTTGTAGTGCAATGGTACCTGTCCAGCTT
TTACAAAAAACCCAAGGGCCTAAAGAAGCCCTACAATCCGATTCTGGGCG
AGAGGTTCCGTTGCTATTGGCAGCATCCCAGTGGCAGCCGAACCTTTTAT
ATTGCAGAGCAGGTGTCGCACCATCCGCCCGTATCGGCATTCTACGTGAC
GAACCGCGAGGACGGCTTCAGCATCACCTGCTCCATCCTGGCGAAATCGA
AGTTCTACGGCAACAGCACTTCTGCGGTGCTTGAGGGCGCTGCCACAATG
ACGTTGCTGCCGCGCGGTGAGTGTTACACGGCCACAACGCCGTACGCCCA
CTGCAAGGGCATCCTGATGGGCACGCTCTCCATGGAGCTGGGTGGCAAGA
TCAACATCGAGTGTGAGAACACCGGTTACAGGACGGAGCTGGAATTCAAG
CTGAAGCCGTTCCTCGGAGGAGCGGACGCCACCAATGTGGTAGTCGGCAA
GATCAAGCTGGGCAAGGAGACGCTGGCCACTATCAACGGTCACTGGGACA
AGGAGTGTCGCGTAAAGGACTCCAAGACGGGAGAGGAAACGGTATTGTTC
AAGGTGGATGCTGAGACACGTTCCAAGCGTCTTACCCGGTACATGGTGCC
GCTGGACCTACAAGAGGCCAACGAATCCCAGCGCCTGTGGCAGCGAGTAT
CCGAAGCGATTGCCAATGAGGATCAGGTTGCGGCCACAGAGGAGAAGACC
GTGCTCGAGGAGCGCCAGCGAGCTGATGCCAAGGAGCGACTCAGCTCCGA
CTCTGTCCATATGCCCGATCTCTTCGAGCTGGACAGCTACGGTCAATGGC
TGTACAAGTACGCCGATCTGCGGCCCTGGGACTCGCGCAACGATGTCCGC
CAGTACGAGTGTCAGTTCAAGGTCCTGACCCAGACGCGTCACAAGTCCGT
GCCCATTGTCCATGGGGCCGAGATGATCCACCCCCTGCGCAGCTCCATCG
AGACATTATCCCGCACCCAAAGACAATCGCCAGCCGGACAGCCCTTACCG
CCGGGCGGCTCCGCTGTGCCCAAGGCCAAGAATAAGAGCTTGGTGCTGGC
GCCGCGCGACACTAACTCGGACTCCAGTCAGTCGCCGCAGGGAGCGGTCA
AGCGCAGCTCCTCCAGCGCCATTAAGCAACTTGCTTTGGCCGTGGACCAG
GTGAACCGGGTGTTGGAGCAGCATACCCGACAGCTGAATGAGATCAGCCA
GCGCCTGGAGCGCATGCAGTACTCGCCCCCGCCTAGTAGCATGAGTGCGC
ATTCGCTTCATATGTTGGGCGGCGGCGTATCGCAGTCGACGGTGATCAAG
TCGCTAATCTACGCTCTGATCGGGCTGGCTTTCAGCCTGATCCTGCGCTG
GCTGTTCAAGGCAAGCTTTCTAGACCAT
BO29184.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:23:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42668-RF | 2397 | CG42668-PF | 1..2394 | 17..2410 | 11970 | 100 | Plus |
| CG42668-RN | 2454 | CG42668-PN | 908..2451 | 867..2410 | 7720 | 100 | Plus |
| CG42668-RM | 2973 | CG42668-PM | 1427..2970 | 867..2410 | 7720 | 100 | Plus |
| CG42668-RN | 2454 | CG42668-PN | 20..860 | 33..873 | 4205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:23:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42668-RF | 3410 | CG5077-RF | 266..2660 | 16..2410 | 11975 | 100 | Plus |
| CG42668-RN | 3324 | CG42668-RN | 1031..2574 | 867..2410 | 7720 | 100 | Plus |
| CG42668-RM | 4342 | CG42668-RM | 2049..3592 | 867..2410 | 7720 | 100 | Plus |
| CG42668-RN | 3324 | CG42668-RN | 143..983 | 33..873 | 4205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:23:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20321949..20323142 | 985..2178 | 5970 | 100 | Plus |
| 3R | 32079331 | 3R | 20320214..20320451 | 461..698 | 1190 | 100 | Plus |
| 3R | 32079331 | 3R | 20319767..20320002 | 228..463 | 1180 | 100 | Plus |
| 3R | 32079331 | 3R | 20323215..20323446 | 2179..2410 | 1160 | 100 | Plus |
| 3R | 32079331 | 3R | 20321475..20321636 | 698..859 | 810 | 100 | Plus |
| 3R | 32079331 | 3R | 20319562..20319712 | 81..231 | 755 | 100 | Plus |
| 3R | 32079331 | 3R | 20321763..20321881 | 867..985 | 595 | 100 | Plus |
| 3R | 32079331 | 3R | 20318977..20319026 | 33..82 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:23:05 has no hits.
BO29184.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:55:43 Download gff for
BO29184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42668-RF | 178..2571 | 17..2412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:29:17 Download gff for
BO29184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42668-RF | 267..2660 | 17..2412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:14 Download gff for
BO29184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42668-RF | 267..2660 | 17..2412 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:14 Download gff for
BO29184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20318270..20318285 | 17..32 | 100 | -> | Plus |
| 3R | 20318977..20319030 | 33..86 | 96 | -> | Plus |
| 3R | 20319568..20319710 | 87..229 | 100 | -> | Plus |
| 3R | 20319769..20320000 | 230..461 | 100 | -> | Plus |
| 3R | 20320215..20320451 | 462..698 | 100 | -> | Plus |
| 3R | 20321476..20321636 | 699..859 | 100 | -> | Plus |
| 3R | 20321702..20321713 | 860..871 | 100 | -> | Plus |
| 3R | 20321768..20321880 | 872..984 | 100 | -> | Plus |
| 3R | 20321949..20323142 | 985..2178 | 100 | -> | Plus |
| 3R | 20323215..20323446 | 2179..2412 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:29:17 Download gff for
BO29184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16145290..16145432 | 87..229 | 100 | -> | Plus |
| arm_3R | 16143992..16144007 | 17..32 | 100 | -> | Plus |
| arm_3R | 16144699..16144752 | 33..86 | 96 | -> | Plus |
| arm_3R | 16145491..16145722 | 230..461 | 100 | -> | Plus |
| arm_3R | 16145937..16146173 | 462..698 | 100 | -> | Plus |
| arm_3R | 16147198..16147358 | 699..859 | 100 | -> | Plus |
| arm_3R | 16147424..16147435 | 860..871 | 100 | -> | Plus |
| arm_3R | 16147490..16147602 | 872..984 | 100 | -> | Plus |
| arm_3R | 16147671..16148864 | 985..2178 | 100 | -> | Plus |
| arm_3R | 16148937..16149168 | 2179..2412 | 99 | | Plus |
BO29184.pep Sequence
Translation from 16 to 2428
> BO29184.pep
MNLLQRIANWASDNRDGNVADKSAADAAKLNRKESYKAQRKNYRREKKRV
ASELMNSLQDPAVIVLADWLKVRGTLKSWTKLWCVLKPGLLLIYKSQKTK
SSHWVGTVMLTSCQVIERPSKKDGFCFKLFHPLEQSIWAPRGPDKETIGA
VVQPLPTAYLIFRAPSQAAGKCWMDALELSLRCSALLLRSNSSTGTAPTS
SYIGEPLPVSHETQWSEADYEKHFNDHDLDADSQNEAPNAVMSGLESESE
SDPAEPAQDDVVDQQCVETSYVPFTEEEFGEQGEQVRPGMDLSKVVLPTF
ILEPRSFLDKLSDSYYHADLLSKAVQEDDAFTRMKLVVQWYLSSFYKKPK
GLKKPYNPILGERFRCYWQHPSGSRTFYIAEQVSHHPPVSAFYVTNREDG
FSITCSILAKSKFYGNSTSAVLEGAATMTLLPRGECYTATTPYAHCKGIL
MGTLSMELGGKINIECENTGYRTELEFKLKPFLGGADATNVVVGKIKLGK
ETLATINGHWDKECRVKDSKTGEETVLFKVDAETRSKRLTRYMVPLDLQE
ANESQRLWQRVSEAIANEDQVAATEEKTVLEERQRADAKERLSSDSVHMP
DLFELDSYGQWLYKYADLRPWDSRNDVRQYECQFKVLTQTRHKSVPIVHG
AEMIHPLRSSIETLSRTQRQSPAGQPLPPGGSAVPKAKNKSLVLAPRDTN
SDSSQSPQGAVKRSSSSAIKQLALAVDQVNRVLEQHTRQLNEISQRLERM
QYSPPPSSMSAHSLHMLGGGVSQSTVIKSLIYALIGLAFSLILRWLFKAS
FLDH
BO29184.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:12:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42668-PF | 798 | CG5077-PF | 1..798 | 1..798 | 4157 | 100 | Plus |
| CG42668-PH | 816 | CG5077-PH | 1..816 | 1..798 | 4128 | 97.8 | Plus |
| CG42668-PN | 817 | CG42668-PN | 8..817 | 7..798 | 4099 | 97.8 | Plus |
| CG42668-PM | 990 | CG42668-PM | 181..990 | 7..798 | 4099 | 97.8 | Plus |
| CG42668-PL | 956 | CG42668-PL | 147..956 | 7..798 | 4099 | 97.8 | Plus |
