BO29185.complete Sequence
3052 bp assembled on 2011-09-19
GenBank Submission: KX798342
> BO29185.complete
GAAGTTATCAGTCGACATGGTGCGCTCCACTGCCCGAGCCTCGTTGCGCA
AGGCAGCATCCACACTTTCGTCTAACTCGACACCGGAGGCTCCAGCTATG
GCACCCGCTGCTTCGACTGCTCCAGCTGCTCCGGCTGCTCCAGCTGCTCC
AGCTGCTCCTCTTGTCCGCGAACGATCGCTGGCCAAGCGGATCAAGGCAC
CTCCCTGTGATCGTTGTCCCCACTGCGATCGTACCTTTAATCCCAAGGCA
TTTGATCGCCACGTAGAATGGTGTAAGGAAAAGGCCATTCAGGCCACCAT
GAAGTCCACCAACAGCCAGGAGACCAGCAAAGCCAAGGAGCGCCTGGAGG
CCAGGAAGCAGTACAGGCCGCCCAATCTGAAGACCAAGAGATCCCTCGCC
AGGGATAAGTACTCCGGTAACCACGAGGAGGTTCTGGAAGCGGGTGAGAT
GACAACACCCAAACCAAACCTGATGTCCCATTCGATGACGTCGTCCGTGC
ACAGTGATAACACTCAAGCTCAAGTCTCCAGCTCGCGAGGAGGAAGTCGT
GCCAAAGCAAACTCCACGGTTACCCAGAACCAAGTGAACCTGTTCAATGA
GGATCCACCATCATCGCCGCCGCCCAGGGAACGATCTGCACTGCGCCGTT
CCAAGCGCACTCAGCGGGAATCCTGCATAGAAATTGACGAGACCATGGAA
CAACTAAGGCGGAACGGCAGTGGAGATGCTCTCCAGTTGGCCAAACTCGA
TTGCGTGGAAGCGCCAGTTCTCCAGCCAGCTAGACGACGCAAGAGAGGGC
CCAAGACGGATAAACTAGATGCGGTCGAAAAGCAAATCTGCCTTCCCCAA
GTAACCATGACATTTGACGAGCTCAATGGGTTAATCAAGCGCAAAGGCGG
CACGCCCATTTGCAATGTGGAAATGGATGAGCAGGGAATCGGTAGTCTGG
TCTCCAAGCACCAATCATCAGCAACCCTAGTGCGTCAGGCGCGTCGTCGG
ATTCGCACCAAGGAGAACCCCGATCTGGAGTTGCGTGCCCTGCAATCGTC
ATGTTCAGCAATTTCCAAAGATGTACAGTATGCTTCCCTGAACTCTAGCC
TAGTGCCCATGCAGAGAAATCAGTCAAAGGTGTACTCCGGATCCGAGGAG
GATTCGCCAAGGTCAGAGATTCAGATAAAGCTAGAAACTGCAACCATGCG
CACGGTATGCCGACCCCAGAAGAAATCAGGTCGCTCTTCCCAGTTGATGA
CTGACTCGGAGCCCAAACGAGCTTTGCCAATGTCAGATTTAAAGGAAAGC
TTTGAGGCCATCAACCAATCCATAGGGCAAACAGTTCTCCCAAGATTACA
GCTGGGAAATGAGAGGCAGGACTACGAACCGGAGGAGGACGGAGCGGATA
ATTATACCAGTGATCTAGATGATGAACCTGAAGGTGTTGACCTAATGGCT
CGAGCGGCAAAACTGATAGAGAGGGCTCGTTCAAGCTCCAGCCCCATCCC
CAATCCTGAGCAGGTAGATAGCCACAGTGAATATGAAGAGGAGCAACCAG
AGGCGGAACGGGAACCGCCTTTGAACAAACAAAATGGCAACGTCAGTCGC
CGTGTATCGCTTGAGGATAACGAAAGTGCTATTGCGTATTTCAAGGCACT
TAATGCAAAGCGTCGTTCAAATAGGTCTGATTCAAAAATGCCCGAGGACA
AGCTGCAACGGCAGCAGTCGAATGCCTCCAATGCCAGCAGCCAGGAGGAG
AAGAGCCGCCAGGAGACGGAGAAACGGCCGGCCGACGATGATCAACGGAA
GCGAGAGATTTTTATTAGCATTGAGACGGAGGCCAATGCTCAGGGGCGCT
CACCCATTTCGCCCGATTCACTGCGCCACATGGTGGGCAATGCCCAGACG
CACATCGATGTCCTGCACATTGAAAACGGAAACGAGCCGGAACACGCAAG
ATTTAGCAAGATCAGCGACACGGAGGACGCCGGAAACGAGCCCAGGGATC
AGGCCAGCCAATCTACTAACCGGCTGACCCCATCCTCGAGCGGATCCGGA
TTGGCGCCCAACGTGCAGCTGAACAATGCCAAGAATCTGATCCAGCAGAT
GCATAGCGAATTTCGGCTTATGGGCGAGGAGGCCAGTGCCTCCATGCGGC
GCCAGCTTATCGGAAGTAGCGGCGGTAGAGGCGAGGAAGCGCAGCGCTCC
AGTAGTGGGCTCCCTGCTCCAAATCCAACACACCAGGTCGTGGCCAGCTC
ACCGTCGGCGGATTCAGATGAGTTAAGCAGTCTCGATGGCTATCCCATGT
CCTCGTCGCAGGGTTCACGTCGGGGAGCCAGCTCCAAGCTAAGCACGGAT
TCAGCATACGGCAGCAGCAACTCACCTTATAGCTTGTCGCGACAACGCTC
CTCTGAACTCCAAGCCGGCACACTACAGTCCCAGGGATTGATGCGTCCAC
ATACGGCCAGTGCCAAGATGGCCAGCTGCATGATCGATGCCTCCACGCAG
GCACACACTGATTATGGCACCCTGAAGGCTCGCCAGCGTCTCTTTGCACC
CGAATGTGGAAACAACAATGGCGAAGGAGGCGAGTCGTACAGTAGCGGAT
CCGAACACTCTTTTGCAACCAATCCAAAACAGGAGCAGAACATCAACTAC
AACTATCAACAGCCACTGCAGCAAGATCAGCAGAAGCAGCAGCAGATGCA
GAAGCAGCAGCAGATGCAGCAGCAGCAACAGATGCAGCAGCAGCAACAGA
TGCAGCAGCAACAGATGCAGCAAATGAACTGCAACTACAACTACCATCAA
GAGCAGCAGCAGCTTCATCATCAGCAGCAGCAGGCTAAAATCCCAGCATC
AACAGGTTACAACACAACAAACAACAATGTACCGATGACACCCACAACGT
CAGAGAACTCATTGATGAGCACCTCGTCCATGAGCTCAAGTAAGAAGTCC
AATTACTGCTACGAATGTGGCTCCAAGTTCATATTCGAGACCGCCAAGTT
CTGCATGGATTGCGGCTTGAGACGTGCTGAACTTGCAAGCTTTCTAGACC
AT
BO29185.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:25:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30460-RH | 3021 | CG30460-PH | 1..3018 | 17..3034 | 15090 | 100 | Plus |
| CG30460-RI | 2667 | CG30460-PI | 12..2664 | 382..3034 | 13265 | 100 | Plus |
| CG30460-RF | 5400 | CG30460-PF | 838..2495 | 17..1674 | 8290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:25:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30460-RH | 4400 | CG30460-RH | 569..3586 | 17..3034 | 15090 | 100 | Plus |
| CG30460-RI | 2918 | CG30460-RI | 55..2707 | 382..3034 | 13265 | 100 | Plus |
| CG30460-RF | 6303 | CG30460-RF | 930..2587 | 17..1674 | 8290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:25:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17069897..17070678 | 1676..895 | 3910 | 100 | Minus |
| 2R | 25286936 | 2R | 17067526..17068217 | 2364..1673 | 3460 | 100 | Minus |
| 2R | 25286936 | 2R | 17066785..17067456 | 3034..2363 | 3360 | 100 | Minus |
| 2R | 25286936 | 2R | 17071119..17071505 | 897..511 | 1935 | 100 | Minus |
| 2R | 25286936 | 2R | 17071971..17072336 | 382..17 | 1830 | 100 | Minus |
| 2R | 25286936 | 2R | 17071727..17071855 | 510..382 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:25:45 has no hits.
BO29185.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:54 Download gff for
BO29185.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30460-RE | 574..2233 | 17..1674 | 99 | -> | Plus |
| CG30460-RE | 3774..5133 | 1675..3036 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:10:31 Download gff for
BO29185.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30460-RH | 569..3586 | 17..3036 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:18:29 Download gff for
BO29185.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30460-RH | 569..3586 | 17..3036 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:18:29 Download gff for
BO29185.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17066783..17067454 | 2365..3036 | 99 | <- | Minus |
| 2R | 17067526..17068215 | 1675..2364 | 100 | <- | Minus |
| 2R | 17069899..17070676 | 897..1674 | 100 | <- | Minus |
| 2R | 17071120..17071505 | 511..896 | 100 | <- | Minus |
| 2R | 17071727..17071855 | 382..510 | 100 | <- | Minus |
| 2R | 17071972..17072336 | 17..381 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:10:31 Download gff for
BO29185.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12954288..12954959 | 2365..3036 | 99 | <- | Minus |
| arm_2R | 12955031..12955720 | 1675..2364 | 100 | <- | Minus |
| arm_2R | 12957404..12958181 | 897..1674 | 100 | <- | Minus |
| arm_2R | 12958625..12959010 | 511..896 | 100 | <- | Minus |
| arm_2R | 12959232..12959360 | 382..510 | 100 | <- | Minus |
| arm_2R | 12959477..12959841 | 17..381 | 100 | | Minus |
BO29185.pep Sequence
Translation from 16 to 3052
> BO29185.pep
MVRSTARASLRKAASTLSSNSTPEAPAMAPAASTAPAAPAAPAAPAAPLV
RERSLAKRIKAPPCDRCPHCDRTFNPKAFDRHVEWCKEKAIQATMKSTNS
QETSKAKERLEARKQYRPPNLKTKRSLARDKYSGNHEEVLEAGEMTTPKP
NLMSHSMTSSVHSDNTQAQVSSSRGGSRAKANSTVTQNQVNLFNEDPPSS
PPPRERSALRRSKRTQRESCIEIDETMEQLRRNGSGDALQLAKLDCVEAP
VLQPARRRKRGPKTDKLDAVEKQICLPQVTMTFDELNGLIKRKGGTPICN
VEMDEQGIGSLVSKHQSSATLVRQARRRIRTKENPDLELRALQSSCSAIS
KDVQYASLNSSLVPMQRNQSKVYSGSEEDSPRSEIQIKLETATMRTVCRP
QKKSGRSSQLMTDSEPKRALPMSDLKESFEAINQSIGQTVLPRLQLGNER
QDYEPEEDGADNYTSDLDDEPEGVDLMARAAKLIERARSSSSPIPNPEQV
DSHSEYEEEQPEAEREPPLNKQNGNVSRRVSLEDNESAIAYFKALNAKRR
SNRSDSKMPEDKLQRQQSNASNASSQEEKSRQETEKRPADDDQRKREIFI
SIETEANAQGRSPISPDSLRHMVGNAQTHIDVLHIENGNEPEHARFSKIS
DTEDAGNEPRDQASQSTNRLTPSSSGSGLAPNVQLNNAKNLIQQMHSEFR
LMGEEASASMRRQLIGSSGGRGEEAQRSSSGLPAPNPTHQVVASSPSADS
DELSSLDGYPMSSSQGSRRGASSKLSTDSAYGSSNSPYSLSRQRSSELQA
GTLQSQGLMRPHTASAKMASCMIDASTQAHTDYGTLKARQRLFAPECGNN
NGEGGESYSSGSEHSFATNPKQEQNINYNYQQPLQQDQQKQQQMQKQQQM
QQQQQMQQQQQMQQQQMQQMNCNYNYHQEQQQLHHQQQQAKIPASTGYNT
TNNNVPMTPTTSENSLMSTSSMSSSKKSNYCYECGSKFIFETAKFCMDCG
LRRAELASFLDH
BO29185.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:04:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30460-PH | 1006 | CG30460-PH | 1..1006 | 1..1006 | 5146 | 100 | Plus |
| CG30460-PI | 888 | CG30460-PI | 4..888 | 122..1006 | 4518 | 99.9 | Plus |
| CG30460-PF | 1799 | CG30460-PF | 280..831 | 1..552 | 2806 | 100 | Plus |
| CG30460-PE | 1711 | CG30460-PE | 192..743 | 1..552 | 2806 | 100 | Plus |
| CG30460-PA | 1520 | CG30460-PA | 1..552 | 1..552 | 2806 | 100 | Plus |
| CG30460-PF | 1799 | CG30460-PF | 1344..1799 | 551..1006 | 2342 | 99.6 | Plus |
| CG30460-PE | 1711 | CG30460-PE | 1256..1711 | 551..1006 | 2342 | 99.6 | Plus |
