BO29189.complete Sequence
2938 bp assembled on 2011-09-19
GenBank Submission: KX795504
> BO29189.complete
GAAGTTATCAGTCGACATGTCGGCGCAATATCAAAGATTCCTGAAAGTAC
TAGAAAAGTGGCCAGCGGAGAAATCAAAAGTCGGCAGCGGAGAGTGGACA
GCAGAGCCGGCTATCAAGATGAGTGGGGCCAAGATCATATCGGGCACGGC
GGTGGCCAAATCCATTCGCGAAGAGCTGCGTAACGAGGTGACGGCTATGA
GCAAGCAATTGGCGGATTTTGTGCCCGGCTTAAGGATTGTCCAGGTTGGT
GGACGTGAGGACTCCAACGTTTACATCCGCATGAAGATCAAGGCGGCTAC
GGAGATCGGTATCGATGCCGCCCACGTCCAGCTGCCCCGATCCATCACCG
AGGTGGAATTGCTCGATAAGATAAACGATCTGAACGAGGACCCCCGGGTG
CACGGCATCATAGTGCAAATGCCCCTGGATTGTGACACACCCATCGATTC
GCACCGAATTACGGACGCCGTTTCCCCGGAGAAGGATGTTGACGGCTTGC
ACACGGTTAACGAAGGTCGCCTGGCCATCGGTGACCTTGGTGGTTTCCTG
CCCTGCACTCCTTGGGGTTGCCTGGAGTTAATTCGCCGTTCTGGAGTAGA
GATCGCCGGAGCCAGGGCTGTGGTTCTGGGACGCAGCAAGATCGTGGGCA
CTCCCGCCGCCGAACTGCTCAAGTGGGCCAATGCCACGGTCACAGTGTGC
CACTCAAAGACCCGCAACCTGGAGGAGATCACCCGAAGTGCAGACATTCT
GGTGGTCGGAATTGGAGTGGCCGAGATGGTTAAGGGATCGTGGATAAAGC
CCGGAGCAGTGGTCATCGATTGCGGCATCAATGTGAAGCCAGACGCCAGC
AAGGCCAGTGGCAGCAAGCTGGTCGGGGACGTGGACTACGCGGAAGCTCT
CCAAGTGGCAGGACATTTGACGCCAGTGCCCGGCGGCGTGGGACCCATGA
CGGTGGCCATGCTTATGAAAAACACCGTGCGATCTGCGGCCCGATTCCTT
GAGCGTCTTGCTAAGAGCCAGTGGGCCCTTCAAACGCTGCCCCTCAAGCC
CCAGCGTCCCGTGCCCAGCGATATTGTGATTGCCCGTGCCCAAAAACCGA
AGGACATTGCCGTGCTGGCCAAGGAGATTGGTCTGGAAGCTCGTGAGGTT
TCCTTGTACGGAAATAAGAAGGCCAAGATTTCACTGTCAGTGTTGGAGCG
TCTGAAGGACAAGGAGGTGGGTCACTATGTGGTTGTAGCCGGTATGACAC
CAACGCCTTTGGGTGAGGGTAAGACCACCACACTAATGGGCTTGGTCCAG
GCTCTCGGCGCGCACAAGCTGAGAAACACCATGGCTGCTCTGCGACAGCC
CTCCCAAGGTCCAACCTTTGGCATCAAAGGAGGAGCTGCTGGCGGCGGAT
ACGCCCAGGTGATTCCCATGGAGGAGTTCAATCTCCATCTGACAGGAGAC
ATTCATGCGGTATCGGCAGCCAATAACTTGCTGGCCGCCCAGCTGGACAC
CCGCATCTTCCACGAGAATACCCAAAAGGACAAGGCCTTGTATGACAGAT
TGGTGCCCGCGATCAAGGGTCAGCGGAAATTCAGCCCCATTCAGCTACGC
CGGCTCCAGAAATTGGGAATCACCAAAACCGATCCCGATACCCTTACCGC
TGACGAATACGGACCTTTTGCCCGGCTGGACATCGATCCGGACACGATTA
TGTGGGAGCGTGTGGTGGACATCAACGATCGGTACCTACGCACCATTACC
GTTGGGCAATCGCCCACTGAAAAGGGTATTTCGAGGGAGACCCGGTTCTC
CATCTCGGTGGCCAGCGAGATCATGGCTGTGCTAGCACTATCCCGAAGTC
TGGAGGACATGAAGCAGCGGCTGGCTGACATGGTGGTGGCATTCGACAAA
CGAGGCAAGCCCGTAACCGCTGACGATTTGGGTGTCACCGGTGCCCTGGC
AGTTCTTTTGAAGGACGCTCTCGAGCCGAACCTGATGCAGTCGCTCGAGG
GAACTCCAGTGCTGGTGCACGCTGGTCCCTTTGCCAACATCGCCCACGGT
TGCAACTCGATCATCGCTGATGAAGTCGGCCTAAAGCTGGTTGGTAAAAA
TGGATTTGTCTGCACGGAGGCCGGGTTCGGATCAGATATTGGCATGGAAA
AGTTTTGCAACATTAAGTGTCGGACATCCGGTCGCAAGCCGAACGCCATG
GTGCTGGTAGCCACTGTGAGGGCCATCAAGATGCACGGCGGCGGAGCTCC
CGTCACTCCCGGAGCCCCCTTGAACAAGCAGTACACCGAGGAGAACTTGG
AGCTCGTCCAGAAGGGTCTGCCCAATCTGCTGCAGCACATCGAGAACGGA
AAGGCCTTCGGCATGCCAGTGGTGGTGAGCCTTAATGCTCATTCAGCAGA
CACCCCGGCGGAGCATGAGTTGGTCAAAAAGGCTGCTCTGGAGGCAGGTG
CATTCGCCGCCGTAGTCTCCACTCACTGGGCGGACGGAGGAGCCGGAGCC
GTTCAGCTGGCCGATGCCGTGATCAAGGCCTGCGAACAGGGCAATCAATT
CCGATTGCTCTACGATCTGGAGCTGCCGCTGGTGGATAAGATGAACAAGA
TCGCTACGACGATGTACGGCGCTGGAAAGGTGGTGCTCTCGCCGGCGGCT
GAGGAGAAGGTCAAACGCCTGACGGATGCGGGTTTTGGCAATCTACCTAT
CTGCATGTCCAAAGTCTCCGGCTCCTTCACCGGCGATGCCAAAATCAAAG
GCGCCCCCAAGGGCTTCACCCTGGACGTTGAGGACGTATATGTTTCAGCC
GGAGCCGGCTTTGTGGTCGCCATGTGCGGTGAGGTCACCAAAATGCCGGG
TCTTCCCACCCGCCCGGCGATCTACGATATCGATCTGAATACGGAAACCG
GAGAAATTGAGGGCCTATTTGCAAGCTTTCTAGACCAT
BO29189.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:32:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pug-RD | 2907 | CG4067-PD | 1..2904 | 17..2920 | 14520 | 100 | Plus |
| pug-RB | 2907 | CG4067-PB | 1..2904 | 17..2920 | 14520 | 100 | Plus |
| pug-RE | 2898 | CG4067-PE | 63..2895 | 88..2920 | 14165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:32:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pug-RD | 3160 | CG4067-RD | 86..2989 | 17..2920 | 14520 | 100 | Plus |
| pug-RB | 3273 | CG4067-RB | 199..3102 | 17..2920 | 14520 | 100 | Plus |
| pug-RA | 3098 | CG4067-RA | 92..2927 | 85..2920 | 14180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:32:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10700998..10702840 | 839..2681 | 9215 | 100 | Plus |
| 3R | 32079331 | 3R | 10700217..10700690 | 369..842 | 2370 | 100 | Plus |
| 3R | 32079331 | 3R | 10702905..10703145 | 2680..2920 | 1205 | 100 | Plus |
| 3R | 32079331 | 3R | 10699885..10700095 | 160..370 | 1055 | 100 | Plus |
| 3R | 32079331 | 3R | 10699748..10699822 | 85..159 | 375 | 100 | Plus |
| 3R | 32079331 | 3R | 10696732..10696802 | 17..87 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:32:10 has no hits.
BO29189.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:56 Download gff for
BO29189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pug-RD | 83..2986 | 17..2922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:26 Download gff for
BO29189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pug-RB | 215..3118 | 17..2922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:21:16 Download gff for
BO29189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pug-RB | 199..3102 | 17..2922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:21:16 Download gff for
BO29189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10696732..10696802 | 17..87 | 100 | -> | Plus |
| 3R | 10699751..10699822 | 88..159 | 100 | -> | Plus |
| 3R | 10699885..10700095 | 160..370 | 100 | -> | Plus |
| 3R | 10700219..10700690 | 371..842 | 100 | -> | Plus |
| 3R | 10701002..10702839 | 843..2680 | 100 | -> | Plus |
| 3R | 10702906..10703145 | 2681..2922 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:26 Download gff for
BO29189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6522454..6522524 | 17..87 | 100 | -> | Plus |
| arm_3R | 6525473..6525544 | 88..159 | 100 | -> | Plus |
| arm_3R | 6525607..6525817 | 160..370 | 100 | -> | Plus |
| arm_3R | 6525941..6526412 | 371..842 | 100 | -> | Plus |
| arm_3R | 6526724..6528561 | 843..2680 | 100 | -> | Plus |
| arm_3R | 6528628..6528867 | 2681..2922 | 99 | | Plus |
BO29189.pep Sequence
Translation from 16 to 2938
> BO29189.pep
MSAQYQRFLKVLEKWPAEKSKVGSGEWTAEPAIKMSGAKIISGTAVAKSI
REELRNEVTAMSKQLADFVPGLRIVQVGGREDSNVYIRMKIKAATEIGID
AAHVQLPRSITEVELLDKINDLNEDPRVHGIIVQMPLDCDTPIDSHRITD
AVSPEKDVDGLHTVNEGRLAIGDLGGFLPCTPWGCLELIRRSGVEIAGAR
AVVLGRSKIVGTPAAELLKWANATVTVCHSKTRNLEEITRSADILVVGIG
VAEMVKGSWIKPGAVVIDCGINVKPDASKASGSKLVGDVDYAEALQVAGH
LTPVPGGVGPMTVAMLMKNTVRSAARFLERLAKSQWALQTLPLKPQRPVP
SDIVIARAQKPKDIAVLAKEIGLEAREVSLYGNKKAKISLSVLERLKDKE
VGHYVVVAGMTPTPLGEGKTTTLMGLVQALGAHKLRNTMAALRQPSQGPT
FGIKGGAAGGGYAQVIPMEEFNLHLTGDIHAVSAANNLLAAQLDTRIFHE
NTQKDKALYDRLVPAIKGQRKFSPIQLRRLQKLGITKTDPDTLTADEYGP
FARLDIDPDTIMWERVVDINDRYLRTITVGQSPTEKGISRETRFSISVAS
EIMAVLALSRSLEDMKQRLADMVVAFDKRGKPVTADDLGVTGALAVLLKD
ALEPNLMQSLEGTPVLVHAGPFANIAHGCNSIIADEVGLKLVGKNGFVCT
EAGFGSDIGMEKFCNIKCRTSGRKPNAMVLVATVRAIKMHGGGAPVTPGA
PLNKQYTEENLELVQKGLPNLLQHIENGKAFGMPVVVSLNAHSADTPAEH
ELVKKAALEAGAFAAVVSTHWADGGAGAVQLADAVIKACEQGNQFRLLYD
LELPLVDKMNKIATTMYGAGKVVLSPAAEEKVKRLTDAGFGNLPICMSKV
SGSFTGDAKIKGAPKGFTLDVEDVYVSAGAGFVVAMCGEVTKMPGLPTRP
AIYDIDLNTETGEIEGLFASFLDH
BO29189.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:04:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pug-PD | 968 | CG4067-PD | 1..968 | 1..968 | 4926 | 100 | Plus |
| pug-PB | 968 | CG4067-PB | 1..968 | 1..968 | 4926 | 100 | Plus |
| pug-PE | 965 | CG4067-PE | 21..965 | 24..968 | 4804 | 99.9 | Plus |
| pug-PC | 934 | CG4067-PC | 1..934 | 35..968 | 4747 | 100 | Plus |
| pug-PA | 934 | CG4067-PA | 1..934 | 35..968 | 4747 | 100 | Plus |
