BO29190.complete Sequence
2665 bp assembled on 2011-09-19
GenBank Submission: KX800144
> BO29190.complete
GAAGTTATCAGTCGACATGTTCAATGTTCTACAGCGCCTGCTGGGTGTCG
ATCAGCCGGCCAATAAGGTCGTGGAAATTAAGAGCGAAGCGCTGGGGACA
CTTCAAGTCCTGGCCCGCGATGACGCCATGCTCCTCTTTGCACCGCCCTT
CAACAGCAGCAATGAAAAACGAGCCGTCTATGAGATCATTTTGCAGCGAC
CCACCTCGGATTCCAATACCACATCCTTCAGTCTGTACCGGTCGCCGGTG
CAGCAGGAAGCCGAGGAACGCTTCAATGCCTTTCTGCAAAGGCTGCCCGT
TTTCGTCAGCATTGTGAAAGAGTACTACAATGTAAATGGGCTGCAGAAAG
CTTGCGATGCCTTGGCTGATAATCCCTCCTGGACGCTGTCCCATTTGATT
GCCTACTTCAATCTGGTGGACTACATTAGCAATCCCAAGATGCTCCAGTG
CGTGGACCAAGCAGATGCCGCCACCCTAATGTCGCCCTTCCAGTTGGCCA
TCAAACAGGGTCACATGGAGATGGTGAAGGCTCTGCTGCCGCTGAGCAAG
CTGGAACACTTGGATATAAACAGCAATTCGGTGTTTCATTACGCCGCCAG
CACCACCAAAGAGATTATCAATCTTATCATCGATAAAAGCACGGTAAATC
TGAATCATCTCAACTCCGATGGGTACACACCACTTCATGTCGCCTGCCTC
GCCGACAAGCCAGAGAATGTGAAGGCACTGTTGCTGGCTGGGGCCAATGT
CAATCTCAATGCCAAGGACATCCGCAAAGTGTACAAGACATCCGCACCGA
CCACGGTTTCCTCGTTTCTGCGCACCAATGTTAGCAAGCTGTACACACAG
GACATGAAATATGGCGGCACTCCTCTGCACTGGTGTTCCTCCCGTGAAAC
CCTGCATGCGCTGATCATGGAGGGTTGTGATGTCAACGCCACGAACTTTG
ATGGACGGACAGCACTGCACGTGATGGTGGCCAGGAATCGGTTCGAGTGC
GTTGTCACACTACTGGCCCACGATGCGGAGATCGATGTGCTGGACAAAGA
CGGAAATGCAGCTTTGCACATTGCCATTGAGAAGAAACTAGTGCCGATCG
TCCAATGTCTGGTGGTCTTTGGGTGTGACATCAATCTGAAGAACAAGGAT
GGCAAAACGCCACGTCACATGGTTGGCAATGATGCTAGTGGCAATAAGGA
TGATGAAATCCTATACATTCTGCACTCTGTGGGGGCTAAGCGCTGCAAGG
ATACTGGTTCAAAGTGCCCGCCTGGTTGCAATGCCAAAGGTAACTACAAC
GGCATTCCGCCAGAGGCACCGGAATCCGTGGAGCAGCGCGAGCATATAGA
GCACATGCTGGCCACCACCAGTCGACAAATGATGGGTGGTTTTTTGAACG
CAGCGGCCAATGGAATATTGGAGAAGCAACAACCGGCACAAAAACCAGTC
GTGGTCGATACGGAGAAAGAATTAAAAGGCCAAAGTATAATGGATGCCCT
GCTTGGCATGTTTACAACCAAAGTGAATGCGGACGAGATGAAGAAGGAGA
ACTCGTCGGATAGTTTGGCCAGTGGCTCGCAAAAATCCGCTGTGTCTAGT
CCGGAGCAGCTGCCTTCACCCACCTCGCCCATTGCCGCTGAAATAGGCGA
TAAACCCTACGGACGCGGACGTCTGCTCTGCTTGGATGGTGGTGGCATTC
GTGGTCTAGTCCTGGTACAGATGCTACTCGAAATAGAAAAGCTTTCTCGC
ACTCCTATTATCCATATGTTCGACTGGATTGCCGGCACCAGTACTGGCGG
AATTCTAGCTTTGGCGCTGGGTTGCGGCAAAACGATGCGTCAATGCATGG
GCCTCTATTTGCGCATGAAGGAGCAGTGTTTTGTGGGCTCACGGCCCTAT
AACAGCGAGTTTTTCGAGTCCATTTTGAAGGACAATCTGGGCGAGTTTAA
CGTGATGACGGATATTAAGCACCCGAAGATCATGGTCACTGGTGTGATGG
CGGATCGCAAGCCGGTCGATCTACATCTATTCCGCAACTATACGAGCGCC
AGTGACATTTTGGGCATTGTGACTCCAATTAACAACCGAAGAATTCCTCC
TCCTCAGCCTTCGGAACAATTGGTATGGCGTGCTGCTCGGGCTACTGGAG
CTGCGCCCTCATATTTCCGCGCATTTGGTCGCTTTCTGGACGGCGGCTTG
ATTGCCAACAACCCGACTCTAGACGCCATGACCGAGATTCACGAGTACAA
TATGGCCTTGCGTAGCGCTGGACGCGAATCAGAGGCCATACCTGTATCCG
TGGTGATGTCGCTGGGCACGGGTCATATTCCGGTGACTGAACTTAAGGAC
ATTGATGTCTTCCGGCCGGAGAGCATCTGGGATACGGCCAAACTGGCCTA
CGGAATCTCTACCATTGGCAATCTGCTAGTGGACCAGGCCACCTGCTCCG
ATGGAAGAGTAGTGGACAGAGCTCGCGCCTGGTGCAGCACGATTGGCATA
CCCTACTTCAGGTTCAATCCTCAGCTGAGCGAGGACATCGCCATGGACGA
AAAGGACGACCAAAAACTGATCAATATGCTGTGGCACACTAAGGCGTATA
TGCACGCCAATCGGAATAAGATAATCGAGATGATCAATTTCCTAAAAGCA
AGCTTTCTAGACCAT
BO29190.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:33:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| iPLA2-VIA-RA | 2634 | CG6718-PA | 1..2631 | 17..2647 | 13155 | 100 | Plus |
| iPLA2-VIA-RD | 2664 | CG6718-PD | 40..2661 | 26..2647 | 13110 | 100 | Plus |
| iPLA2-VIA-RC | 2664 | CG6718-PC | 40..2661 | 26..2647 | 13110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:33:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| iPLA2-VIA-RA | 3269 | CG6718-RA | 148..2778 | 17..2647 | 13155 | 100 | Plus |
| iPLA2-VIA-RD | 3592 | CG6718-RD | 480..3101 | 26..2647 | 13110 | 100 | Plus |
| iPLA2-VIA-RC | 3685 | CG6718-RC | 573..3194 | 26..2647 | 13110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:33:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9862091..9862908 | 1440..623 | 4090 | 100 | Minus |
| 3L | 28110227 | 3L | 9861395..9862035 | 2081..1441 | 3205 | 100 | Minus |
| 3L | 28110227 | 3L | 9860999..9861335 | 2418..2082 | 1685 | 100 | Minus |
| 3L | 28110227 | 3L | 9862963..9863264 | 622..321 | 1510 | 100 | Minus |
| 3L | 28110227 | 3L | 9863321..9863617 | 322..26 | 1485 | 100 | Minus |
| 3L | 28110227 | 3L | 9860708..9860938 | 2647..2417 | 1155 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:33:43 has no hits.
BO29190.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:57 Download gff for
BO29190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iPLA2-VIA-RA | 163..2784 | 22..2643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:41 Download gff for
BO29190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iPLA2-VIA-RA | 163..2784 | 22..2643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:02 Download gff for
BO29190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iPLA2-VIA-RA | 153..2774 | 22..2643 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:02 Download gff for
BO29190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9863321..9863619 | 22..322 | 99 | | Minus |
| 3L | 9860712..9860937 | 2418..2643 | 100 | <- | Minus |
| 3L | 9861000..9861335 | 2082..2417 | 100 | <- | Minus |
| 3L | 9861395..9862035 | 1441..2081 | 100 | <- | Minus |
| 3L | 9862091..9862908 | 623..1440 | 100 | <- | Minus |
| 3L | 9862963..9863262 | 323..622 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:41 Download gff for
BO29190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9853812..9854037 | 2418..2643 | 100 | <- | Minus |
| arm_3L | 9854100..9854435 | 2082..2417 | 100 | <- | Minus |
| arm_3L | 9854495..9855135 | 1441..2081 | 100 | <- | Minus |
| arm_3L | 9855191..9856008 | 623..1440 | 100 | <- | Minus |
| arm_3L | 9856063..9856362 | 323..622 | 100 | <- | Minus |
| arm_3L | 9856421..9856719 | 22..322 | 99 | | Minus |
BO29190.pep Sequence
Translation from 16 to 2665
> BO29190.pep
MFNVLQRLLGVDQPANKVVEIKSEALGTLQVLARDDAMLLFAPPFNSSNE
KRAVYEIILQRPTSDSNTTSFSLYRSPVQQEAEERFNAFLQRLPVFVSIV
KEYYNVNGLQKACDALADNPSWTLSHLIAYFNLVDYISNPKMLQCVDQAD
AATLMSPFQLAIKQGHMEMVKALLPLSKLEHLDINSNSVFHYAASTTKEI
INLIIDKSTVNLNHLNSDGYTPLHVACLADKPENVKALLLAGANVNLNAK
DIRKVYKTSAPTTVSSFLRTNVSKLYTQDMKYGGTPLHWCSSRETLHALI
MEGCDVNATNFDGRTALHVMVARNRFECVVTLLAHDAEIDVLDKDGNAAL
HIAIEKKLVPIVQCLVVFGCDINLKNKDGKTPRHMVGNDASGNKDDEILY
ILHSVGAKRCKDTGSKCPPGCNAKGNYNGIPPEAPESVEQREHIEHMLAT
TSRQMMGGFLNAAANGILEKQQPAQKPVVVDTEKELKGQSIMDALLGMFT
TKVNADEMKKENSSDSLASGSQKSAVSSPEQLPSPTSPIAAEIGDKPYGR
GRLLCLDGGGIRGLVLVQMLLEIEKLSRTPIIHMFDWIAGTSTGGILALA
LGCGKTMRQCMGLYLRMKEQCFVGSRPYNSEFFESILKDNLGEFNVMTDI
KHPKIMVTGVMADRKPVDLHLFRNYTSASDILGIVTPINNRRIPPPQPSE
QLVWRAARATGAAPSYFRAFGRFLDGGLIANNPTLDAMTEIHEYNMALRS
AGRESEAIPVSVVMSLGTGHIPVTELKDIDVFRPESIWDTAKLAYGISTI
GNLLVDQATCSDGRVVDRARAWCSTIGIPYFRFNPQLSEDIAMDEKDDQK
LINMLWHTKAYMHANRNKIIEMINFLKASFLDH
BO29190.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:04:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| iPLA2-VIA-PA | 877 | CG6718-PA | 1..877 | 1..877 | 4545 | 100 | Plus |
| iPLA2-VIA-PD | 887 | CG6718-PD | 14..887 | 4..877 | 4528 | 100 | Plus |
| iPLA2-VIA-PC | 887 | CG6718-PC | 14..887 | 4..877 | 4528 | 100 | Plus |
| iPLA2-VIA-PB | 887 | CG6718-PB | 14..887 | 4..877 | 4528 | 100 | Plus |
| Ank-PE | 1549 | CG1651-PE | 334..569 | 155..385 | 196 | 27.5 | Plus |
