BO29226.complete Sequence
742 bp assembled on 2011-09-14
GenBank Submission: KX796766
> BO29226.complete
GAAGTTATCAGTCGACATGCGTGCCGCGCCTCCTGAGCCTGAGCCTCTGC
AATTAGCCGGATCCGGTGAACAGTTCCTCGTCCTGGGCGACTCCGGCGTG
GGAAAGACCTGTCTCCTCTACCAGTACACGGATGGCCGGTTCCACACCCA
GTTCATCTCCACTGTGGGCATCGACTTCCGCGAAAAGCGGCTGCTGTACA
ACTCCCGCGGACGCCGCCACCGCATCCACCTGCAGATCTGGGACACCGCC
GGACAGGAGCGCTTCCGTTCACTAACCACGGCGTTTTACCGCGACGCCAT
GGGTTTCCTGCTCATCTTCGACCTGACCAGCGAGAAGAGCTTCCTGGAGA
CGGCCAACTGGCTGTCGCAGCTGCGGACGCACGCCTACTCCGAGGACCCC
GACGTGGTCCTCTGCGGCAACAAGTGCGACCTGCTGCAGCTGCGCGTGGT
GAGTCGCGACCAGGTGGCGGCCCTCTGCCGACGCTACCGGCTGCCGTACA
TCGAGACGAGCGCCTGCACCGGCGCCAACGTCAAGGAGGCCGTGGAGCTG
CTGGTTGGCCGGGTCATGGAGCGGATCGAGAACGCGGCCTGCAACCGCGA
GTTCTCCCTGCTACTGACCCAGTCGCGATGCCTGCCGAACATCGCCTACG
GTCAGCCGGAGGACCTGGTGCGCCTCCACGATCGGCGAGAGGAGCCCTGC
TCGCGGCGCAACTGCCGCAACTGTGCAAGCTTTCTAGACCAT
BO29226.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:32:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab27-RB | 711 | CG14791-PB | 1..708 | 17..724 | 3540 | 100 | Plus |
| Rab27-RC | 693 | CG14791-PC | 38..690 | 72..724 | 3265 | 100 | Plus |
| RabX4-RA | 642 | CG31118-PA | 175..274 | 230..329 | 185 | 79 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:32:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab27-RB | 1466 | CG14791-RB | 663..1370 | 17..724 | 3540 | 100 | Plus |
| Rab27-RC | 1564 | CG14791-RC | 816..1468 | 72..724 | 3265 | 100 | Plus |
| Rab27-RC | 1564 | CG14791-RC | 663..719 | 17..73 | 285 | 100 | Plus |
| RabX4-RA | 1416 | CG31118-RA | 625..724 | 230..329 | 185 | 79 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:32:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1473980..1474511 | 724..193 | 2660 | 100 | Minus |
| X | 23542271 | X | 1474675..1474796 | 193..72 | 610 | 100 | Minus |
| X | 23542271 | X | 1476256..1476312 | 73..17 | 285 | 100 | Minus |
| 3R | 32079331 | 3R | 24827475..24827574 | 329..230 | 185 | 79 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:32:38 has no hits.
BO29226.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-14 12:05:44 Download gff for
BO29226.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab27-RB | 619..1326 | 17..726 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:17:30 Download gff for
BO29226.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab27-RB | 619..1326 | 17..726 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:44 Download gff for
BO29226.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab27-RB | 663..1370 | 17..726 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:44 Download gff for
BO29226.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1473978..1474510 | 194..726 | 99 | <- | Minus |
| X | 1474675..1474794 | 74..193 | 100 | <- | Minus |
| X | 1476256..1476312 | 17..73 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:17:30 Download gff for
BO29226.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1368708..1368827 | 74..193 | 100 | <- | Minus |
| arm_X | 1370289..1370345 | 17..73 | 100 | | Minus |
| arm_X | 1368011..1368543 | 194..726 | 99 | <- | Minus |
BO29226.pep Sequence
Translation from 16 to 742
> BO29226.pep
MRAAPPEPEPLQLAGSGEQFLVLGDSGVGKTCLLYQYTDGRFHTQFISTV
GIDFREKRLLYNSRGRRHRIHLQIWDTAGQERFRSLTTAFYRDAMGFLLI
FDLTSEKSFLETANWLSQLRTHAYSEDPDVVLCGNKCDLLQLRVVSRDQV
AALCRRYRLPYIETSACTGANVKEAVELLVGRVMERIENAACNREFSLLL
TQSRCLPNIAYGQPEDLVRLHDRREEPCSRRNCRNCASFLDH
BO29226.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:18:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab27-PB | 236 | CG14791-PB | 1..236 | 1..236 | 1245 | 100 | Plus |
| Rab27-PC | 230 | CG14791-PC | 13..230 | 19..236 | 1147 | 99.5 | Plus |
| Rab8-PC | 207 | CG8287-PC | 10..174 | 19..188 | 389 | 44.7 | Plus |
| Rab8-PA | 207 | CG8287-PA | 10..174 | 19..188 | 389 | 44.7 | Plus |
| Rab10-PA | 204 | CG17060-PA | 11..173 | 19..186 | 387 | 44 | Plus |
