BO29228.complete Sequence
1213 bp assembled on 2011-08-26
GenBank Submission: KX794639
> BO29228.complete
GAAGTTATCAGTCGACATGGAGGCAAATGGCGATACCAGCGCCTGCAATG
GGTATTCGGACAAGCAGCGGAAGGATGTGCGCGTCTGGTGCGATGGATGC
TATGATATGGTACACTTCGGACATGCCAATTCTCTGCGACAAGCCAAGGC
TCTTGGCGATAAGGTAATTGTGGGCATTCACACCGACGAGGAGATCACCA
AGCACAAGGGACCACCGGTCTTCACCGAGGAGGAGCGCGTCAAGATGGTC
AAGGGCATCAAATGGGTGGATGAGGTGGTGCTCGGTGCTCCGTATGTGAC
CACACTGGATGTGCTCGACCAGAACAACTGTGATTTCTGTGTGCATGGAG
ATGACATTACAATGACAGCCGAAGGAGTGGACACATATCATTTGGTCAAA
TCAGCCAATCGCTACAAGGAAGTGAAACGCACAGCTGGAGTCTCGACCAC
TGACCTTGTGGGCCGCATGTTGCTCCTGACACGCAACCACTTCCGTCAAG
GATCCGCGGAATATGATATCGAGAAAGAAGTGTCAATTTTAAAACGACAA
ATAAAATCCCATCCAGGTTCTTCGAACATGGGTCAAGATTCGGCAGCCAA
AAGTCCGTGGACCGGTTGTAGTCAGTTCTTGCCGACTACCCAAAAGATCA
TACAGTTCAGTGATGGAAAGTCACCGAATCCCGGCGATAAGATTGTTTAT
GTGGCTGGCGCCTTCGATCTCTTCCATGTGGGTCACCTGGACTTTCTGGA
AAAGGCTAAGAAACTGGGTGACTATCTGATTGTTGGCCTGCACACAGATC
CCGTGGTGAACTCCTACAAGGGCAGCAACTATCCCATTATGAATCTGCAC
GAGCGCGTGCTCAGTGTTTTGGCCTGCAAGTTTGTCAATGAGGTAGTAAT
CGGAGCTCCCTACTGTGTCACTGAAGAGCTGCTTGAGCACTTCAAAATCG
ATGTTGTCTGTCATGGACGCACACCCATTGCGCTTGAGAATGGCAAGATC
GATCCATATGCCGTTCCCAAGACGCGAGCCATCTTTGAGCTGATCGATTC
CGGCAACGAGATGACCACGGAGCGCATCGTGGAGCGCATCATCTCGCACC
GACTGGAATATGAGCGTCGCAATCAGGCCAAAGAAAAGAAGGAAATCGAA
GCCTTTGAGGCACTTCAACGCCAAAAACAGACCCAAAAGGCCGGCGCAAG
CTTTCTAGACCAT
BO29228.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:49:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pect-RB | 1182 | CG5547-PB | 1..1179 | 17..1195 | 5895 | 100 | Plus |
| Pect-RD | 1146 | CG5547-PD | 513..1143 | 565..1195 | 3155 | 100 | Plus |
| Pect-RC | 1125 | CG5547-PC | 512..1122 | 585..1195 | 3055 | 100 | Plus |
| Pect-RD | 1146 | CG5547-PD | 1..514 | 17..530 | 2570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pect-RB | 2210 | CG5547-RB | 429..1607 | 17..1195 | 5895 | 100 | Plus |
| Pect-RD | 2174 | CG5547-RD | 941..1571 | 565..1195 | 3155 | 100 | Plus |
| Pect-RC | 2153 | CG5547-RC | 940..1550 | 585..1195 | 3055 | 100 | Plus |
| Pect-RD | 2174 | CG5547-RD | 429..942 | 17..530 | 2570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13209909..13210225 | 879..1195 | 1585 | 100 | Plus |
| 2L | 23513712 | 2L | 13208109..13208360 | 99..350 | 1260 | 100 | Plus |
| 2L | 23513712 | 2L | 13209660..13209845 | 695..880 | 930 | 100 | Plus |
| 2L | 23513712 | 2L | 13209429..13209601 | 524..696 | 850 | 99.4 | Plus |
| 2L | 23513712 | 2L | 13208665..13208777 | 418..530 | 565 | 100 | Plus |
| 2L | 23513712 | 2L | 13204190..13204272 | 17..99 | 415 | 100 | Plus |
| 2L | 23513712 | 2L | 13208419..13208488 | 349..418 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:49:10 has no hits.
BO29228.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-26 13:54:52 Download gff for
BO29228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pect-RB | 423..1601 | 17..1197 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:35:10 Download gff for
BO29228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pect-RB | 429..1607 | 17..1197 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:10:37 Download gff for
BO29228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pect-RB | 429..1607 | 17..1197 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:10:37 Download gff for
BO29228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13208665..13208777 | 418..530 | 100 | -> | Plus |
| 2L | 13209436..13209599 | 531..694 | 100 | -> | Plus |
| 2L | 13209660..13209845 | 695..880 | 100 | -> | Plus |
| 2L | 13208110..13208360 | 100..350 | 100 | -> | Plus |
| 2L | 13204190..13204272 | 17..99 | 100 | -> | Plus |
| 2L | 13208421..13208487 | 351..417 | 100 | -> | Plus |
| 2L | 13209911..13210225 | 881..1197 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:35:10 Download gff for
BO29228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13204190..13204272 | 17..99 | 100 | -> | Plus |
| arm_2L | 13208110..13208360 | 100..350 | 100 | -> | Plus |
| arm_2L | 13208421..13208487 | 351..417 | 100 | -> | Plus |
| arm_2L | 13208665..13208777 | 418..530 | 100 | -> | Plus |
| arm_2L | 13209436..13209599 | 531..694 | 100 | -> | Plus |
| arm_2L | 13209660..13209845 | 695..880 | 100 | -> | Plus |
| arm_2L | 13209911..13210225 | 881..1197 | 99 | | Plus |
BO29228.pep Sequence
Translation from 16 to 1213
> BO29228.pep
MEANGDTSACNGYSDKQRKDVRVWCDGCYDMVHFGHANSLRQAKALGDKV
IVGIHTDEEITKHKGPPVFTEEERVKMVKGIKWVDEVVLGAPYVTTLDVL
DQNNCDFCVHGDDITMTAEGVDTYHLVKSANRYKEVKRTAGVSTTDLVGR
MLLLTRNHFRQGSAEYDIEKEVSILKRQIKSHPGSSNMGQDSAAKSPWTG
CSQFLPTTQKIIQFSDGKSPNPGDKIVYVAGAFDLFHVGHLDFLEKAKKL
GDYLIVGLHTDPVVNSYKGSNYPIMNLHERVLSVLACKFVNEVVIGAPYC
VTEELLEHFKIDVVCHGRTPIALENGKIDPYAVPKTRAIFELIDSGNEMT
TERIVERIISHRLEYERRNQAKEKKEIEAFEALQRQKQTQKAGASFLDH
BO29228.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:00:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pect-PB | 393 | CG5547-PB | 1..393 | 1..393 | 2072 | 100 | Plus |
| Pect-PD | 381 | CG5547-PD | 1..381 | 1..393 | 1990 | 96.9 | Plus |
| Pect-PC | 374 | CG5547-PC | 1..374 | 1..393 | 1947 | 95.2 | Plus |
| Pect-PE | 371 | CG5547-PE | 1..371 | 1..393 | 1930 | 94.4 | Plus |
| Cct2-PA | 381 | CG18330-PA | 74..234 | 16..174 | 229 | 36.4 | Plus |
