BO29233.complete Sequence
1257 bp assembled on 2011-10-18
GenBank Submission: KX795196
> BO29233.complete
CCTACGAAGTTATCAGTCGACATGGATTATCGTTTGGTGCCATGTGGTTG
CTGGTTGCTCCCCCTGCTCGGCCTAGCCCTCTTCCCGTTTCCACCGGTCC
ACACGGCTGACGTCACCATGGCTGACGCCGCCCACCAGGAGTTCGCCCGC
CGGCTGGCCCTTTTCTCTATCAACGTGTACGGCAAGCTGTCGGGGCAGAA
GCCCGGCGAGAACATCGTCTTCTCGCCCTTTTCCATCCAGACTTGTGCGG
CGATGGCCAGGCTGGGTGCAGAAAACGAGACGGCTACCCAGCTGGACCAG
GGACTGGGCTTGGCCTCTAGTGACCCAGAGCAAATCGCACACAGTTTTCA
CCAGGTGCTGGCCGCCTACCAGGACAGTCAGATCTTGCGCATCGCCAACA
AGATTTTCGTCATGGATGGCTACCAGCTGCGCCAGGAGTTTGATCAGCTG
TTATCCAAGCAGTTCCTCTCGGCGGCTCAGAGCGTGGACTTTTCCAAAAA
TGTACAAGCAGCGGCCACCATCAACAATTGGGTTGAGCAGCGCACCAACC
ATCTGATCAAGGACCTTGTGCCGGCTGATGTATTGAACTCCGAATCGCGA
CTCGTCCTTGTGAACGCCATTCACTTCAAGGGCACCTGGCAGCACCAGTT
CGCCAAACACTTAACCCGCCCAGACACCTTTCACCTGGATGGGGAGCGAA
CAGTTCAGGTTCCGATGATGAGTTTAAAGGAGCGGTTCCGCTACGCCGAT
CTGCCGGCGCTAGATGCCATGGCTCTGGAACTGCCCTACAAGGACTCAGA
CCTCTCTATGCTGATCGTACTGCCCAACACCAAGACGGGTCTGCCCGCTC
TGGAGGAGAAGTTGCGCCTCACGACCCTCTCGCAGATCACGCAGTCGTTG
TACGAAACAAAGGTAGCGCTCAAATTGCCCAGGTTCAAGGCAGAGTTCCA
AGTGGAATTGTCTGAGGTTTTCCAGAAGCTGGGCATGTCAAGGATGTTCT
CCGATCAGGCTGAATTTGGAAAAATGCTACAAAGTCCGGAGCCATTGAAA
GTGTCAGCCATCATACACAAGGCCTTCATTGAAGTCAACGAGGAGGGAAC
GGAGGCTGCGGCCGCCACGGTATGGCGGGTGATGGCCGTAGCTGCCTTCA
GTCGCAAACACTTCATTGCCAACCATCCTTTTGCTTTCTACGTGAAGACC
CATTACGATCTGCCGATATTCACTGGGCGCTACTTGGGTGCAAGCTTTCT
AGACCAT
BO29233.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:12:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn42Da-RI | 1221 | CG9453-PI | 1..1218 | 22..1239 | 6090 | 100 | Plus |
| Spn42Da-RJ | 1125 | CG9453-PJ | 1..1122 | 118..1239 | 5610 | 100 | Plus |
| Spn42Da-RF | 1236 | CG9453-PF | 1..1099 | 22..1120 | 5495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:12:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn42Da-RI | 1370 | CG9453-RI | 59..1276 | 22..1239 | 6090 | 100 | Plus |
| Spn42Da-RJ | 1490 | CG9453-RJ | 203..1396 | 46..1239 | 5970 | 100 | Plus |
| Spn42Da-RF | 1669 | CG9453-RF | 59..1157 | 22..1120 | 5495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:12:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6877427..6878359 | 978..46 | 4665 | 100 | Minus |
| 2R | 25286936 | 2R | 6877221..6877364 | 1120..977 | 720 | 100 | Minus |
| 2R | 25286936 | 2R | 6876000..6876119 | 1239..1120 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:12:55 has no hits.
BO29233.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-18 10:25:12 Download gff for
BO29233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn4-RI | 49..1272 | 18..1241 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:50:40 Download gff for
BO29233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Da-RI | 53..1276 | 18..1241 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:54:30 Download gff for
BO29233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Da-RI | 53..1276 | 18..1241 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:54:30 Download gff for
BO29233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6877221..6877362 | 979..1120 | 100 | <- | Minus |
| 2R | 6875998..6876118 | 1121..1241 | 98 | <- | Minus |
| 2R | 6877427..6878358 | 47..978 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:50:40 Download gff for
BO29233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2763503..2763623 | 1121..1241 | 98 | <- | Minus |
| arm_2R | 2764726..2764867 | 979..1120 | 100 | <- | Minus |
| arm_2R | 2764932..2765863 | 47..978 | 100 | <- | Minus |
BO29233.pep Sequence
Translation from 21 to 1257
> BO29233.pep
MDYRLVPCGCWLLPLLGLALFPFPPVHTADVTMADAAHQEFARRLALFSI
NVYGKLSGQKPGENIVFSPFSIQTCAAMARLGAENETATQLDQGLGLASS
DPEQIAHSFHQVLAAYQDSQILRIANKIFVMDGYQLRQEFDQLLSKQFLS
AAQSVDFSKNVQAAATINNWVEQRTNHLIKDLVPADVLNSESRLVLVNAI
HFKGTWQHQFAKHLTRPDTFHLDGERTVQVPMMSLKERFRYADLPALDAM
ALELPYKDSDLSMLIVLPNTKTGLPALEEKLRLTTLSQITQSLYETKVAL
KLPRFKAEFQVELSEVFQKLGMSRMFSDQAEFGKMLQSPEPLKVSAIIHK
AFIEVNEEGTEAAAATVWRVMAVAAFSRKHFIANHPFAFYVKTHYDLPIF
TGRYLGASFLDH
BO29233.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:35:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn42Da-PI | 406 | CG9453-PI | 1..406 | 1..406 | 2079 | 100 | Plus |
| Spn42Da-PB | 424 | CG9453-PB | 1..406 | 1..402 | 1897 | 93.1 | Plus |
| Spn42Da-PJ | 374 | CG9453-PJ | 1..374 | 33..406 | 1896 | 100 | Plus |
| Spn42Da-PD | 411 | CG9453-PD | 1..406 | 1..402 | 1881 | 92.4 | Plus |
| Spn42Da-PF | 411 | CG9453-PF | 1..407 | 1..403 | 1880 | 92.4 | Plus |
