BO29246.complete Sequence
1483 bp assembled on 2011-08-26
GenBank Submission: KX797316
> BO29246.complete
GAAGTTATCAGTCGACATGACGGAACGACAGCCGTTGCTCCTCCAGAGCG
ATGCCTCTGACTACGAGGGCAGTCGAGGATCGGCAGCACGACCCGTGCGC
AGCTCTCCGCCGGACAACACTCTCGTCAACGTGCACAGCGAGGACAGCTT
AGCAGCAGCCTCTGGATCGGGAGATGATGAAATTGGATCGACGGATAAGT
CCTATAACCCCACCCATCATCGCGACCTGGAGCATCCGACGTCCAACTTC
GATACCCTGGTTCATCTGCTGAAGGGCAACATTGGTACGGGCATTCTGGC
AATGCCGGATGCCTTTAAGAACGCCGGACTTTATGTGGGACTCTTTGGCA
CAATGATCATGGGAGCCATCTGCACCCACTGCATGCACATGCTGGTCAAC
TGCTCCCACGAGCTGTGCCGGAGATTCCAGCAGCCATCGTTAGATTTCTC
GGAGGTGGCATACTGCAGTTTTGAGTCGGGACCTTTGGGACTAAGACGAT
ACTCCATGTTGGCTCGACGAATTGTTACCACGTTCTTGTTTATCACGCAA
ATCGGTTTCTGCTGCGTCTACTTCCTCTTTGTGGCGTTGAATATCAAGGA
CGTTATGGATCACTACTACAAGATGCCTGTGCAGATTTACCTGCTTATAA
TGCTTGGACCCATGATCCTGTTGAATCTGGTGCGGAATCTGAAGTATTTG
ACACCCGTTTCGCTGGTTGCCGCCCTGCTCACAGTTGCCGGACTGGCCAT
TACATTCTCGTACATGCTGGTGGATCTGCCGGATGTGCACACGGTCAAGC
CGGTGGCCACTTGGGCGACGTTGCCTCTATATTTTGGAACCGCCATCTAC
GCGTTCGAGGGAATTGGTGTTGTCCTGCCCTTGGAGAACAATATGCGCAC
ACCCGAGGACTTTGGCGGCACCACAGGTGTCCTCAACACGGGCATGGTGA
TCGTGGCCTGCTTGTACACAGCTGTCGGGTTCTTCGGCTACCTGAAGTAC
GGCGAACACGTGGAGGGCAGCATTACCCTAAATCTGCCGCAAGGCGACAC
ACTTTCCCAGTTGGTGCGGATTTCAATGGCGGTGGCCATCTTCCTCTCGT
ATACGCTTCAGTTTTATGTGCCTGTGAACATCGTGGAACCCTTTGTGCGA
AGTCATTTCGATACAACGAGGGCCAAGGATTTGTCAGCAACTGTGCTGCG
AGTTGTTCTGGTCACTTTTACCTTCCTGCTGGCCACCTGTATTCCCAATC
TAGGCTCCATTATCTCGCTGGTAGGAGCCGTCAGCAGCTCAGCTTTGGCC
CTAATTGCACCACCCATAATTGAAGTTATTACATTTTACAACGTTGGCTA
TGGACGCTTCAATTGGATGCTATGGAAGGACGTTTTAATCCTGATCTTTG
GACTCTGTGGCTTTGTGTTTGGCACCTGGGCCAGCTTAGCTCAAATCCTG
AACGACAGAACCCACGCAAGCTTTCTAGACCAT
BO29246.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:49:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13384-RI | 1452 | CG13384-PI | 1..1449 | 17..1465 | 7185 | 99.7 | Plus |
| CG13384-RH | 1452 | CG13384-PH | 1..1449 | 17..1465 | 7185 | 99.7 | Plus |
| CG13384-RF | 1452 | CG13384-PF | 1..1449 | 17..1465 | 7185 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13384-RI | 2510 | CG13384-RI | 390..1838 | 17..1465 | 7185 | 99.7 | Plus |
| CG13384-RH | 2560 | CG13384-RH | 440..1888 | 17..1465 | 7185 | 99.7 | Plus |
| CG13384-RF | 2534 | CG13384-RF | 414..1862 | 17..1465 | 7185 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8386480..8387378 | 152..1050 | 4465 | 99.8 | Plus |
| 2L | 23513712 | 2L | 8387891..8388132 | 1224..1465 | 1195 | 99.6 | Plus |
| 2L | 23513712 | 2L | 8387659..8387831 | 1051..1223 | 850 | 99.4 | Plus |
| 2L | 23513712 | 2L | 8386247..8386385 | 17..155 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:49:53 has no hits.
BO29246.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-26 13:54:53 Download gff for
BO29246.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13384-RD | 549..1997 | 17..1467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:35:33 Download gff for
BO29246.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13384-RF | 414..1862 | 17..1467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:10:57 Download gff for
BO29246.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13384-RF | 414..1862 | 17..1467 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:10:57 Download gff for
BO29246.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8386247..8386385 | 17..155 | 100 | -> | Plus |
| 2L | 8386484..8387378 | 156..1050 | 99 | -> | Plus |
| 2L | 8387659..8387831 | 1051..1223 | 99 | -> | Plus |
| 2L | 8387891..8388132 | 1224..1467 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:35:33 Download gff for
BO29246.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8386247..8386385 | 17..155 | 100 | -> | Plus |
| arm_2L | 8386484..8387378 | 156..1050 | 99 | -> | Plus |
| arm_2L | 8387659..8387831 | 1051..1223 | 99 | -> | Plus |
| arm_2L | 8387891..8388132 | 1224..1467 | 98 | | Plus |
BO29246.pep Sequence
Translation from 16 to 1483
> BO29246.pep
MTERQPLLLQSDASDYEGSRGSAARPVRSSPPDNTLVNVHSEDSLAAASG
SGDDEIGSTDKSYNPTHHRDLEHPTSNFDTLVHLLKGNIGTGILAMPDAF
KNAGLYVGLFGTMIMGAICTHCMHMLVNCSHELCRRFQQPSLDFSEVAYC
SFESGPLGLRRYSMLARRIVTTFLFITQIGFCCVYFLFVALNIKDVMDHY
YKMPVQIYLLIMLGPMILLNLVRNLKYLTPVSLVAALLTVAGLAITFSYM
LVDLPDVHTVKPVATWATLPLYFGTAIYAFEGIGVVLPLENNMRTPEDFG
GTTGVLNTGMVIVACLYTAVGFFGYLKYGEHVEGSITLNLPQGDTLSQLV
RISMAVAIFLSYTLQFYVPVNIVEPFVRSHFDTTRAKDLSATVLRVVLVT
FTFLLATCIPNLGSIISLVGAVSSSALALIAPPIIEVITFYNVGYGRFNW
MLWKDVLILIFGLCGFVFGTWASLAQILNDRTHASFLDH
BO29246.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:00:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13384-PI | 483 | CG13384-PI | 1..483 | 1..483 | 2505 | 100 | Plus |
| CG13384-PH | 483 | CG13384-PH | 1..483 | 1..483 | 2505 | 100 | Plus |
| CG13384-PF | 483 | CG13384-PF | 1..483 | 1..483 | 2505 | 100 | Plus |
| CG13384-PE | 483 | CG13384-PE | 1..483 | 1..483 | 2505 | 100 | Plus |
| CG13384-PD | 483 | CG13384-PD | 1..483 | 1..483 | 2505 | 100 | Plus |
