BO29254.complete Sequence
2728 bp assembled on 2011-09-19
GenBank Submission: KX796492
> BO29254.complete
GAAGTTATCAGTCGACATGGCGAGTCTTGGGGGCCAACACGGAAATATTT
CGACTAATCCAGAAGTGGAAAACACAGCCAAGCGACCCGAAAGTCGCGAG
GGCAGCGCCGAGCGAAAAGCGTCCAAAGACCGTGAGGAGAAACTAAAATA
TGCCCGCGATCGCCAAAATGAGGAGCGCCACCGGAAAATCGAGGAACTGC
GTGCCCAGGCGGAGGCCGCCCAGCGGTACCGTGAACAAAAGGAGGAGGAG
CGCCGTCGACGCATCGAGGAGATCCGTACCCGGGACACAGAGAAGCGCCA
CCAGGTGGAGGAGCGCAAGAAGGCCATTTTCGAGGCCGAGAAGGAGCGCC
GCGAGTACATCCTCAAAAAGAATCAGGAACGCGAGTCCCGGATAGAAGTG
AAAAAACGGGACAGAAACTCCATCGGCTTCGCATTTGGCTCCTCGACTCC
CCGCCTGCTGGATGTGCCCGCGGATTATGGTCTGGTATCGCCCAGTGCCT
TTTGGGGTCAGCGGAGGTCCACATCTATATCGAACGTAGCGGGCGCCTCG
CTCACACGTCGAAGTTCAGAGCGTGAACTTGCCGACAGTGGTGCTAAGAA
GCGTGCCTCCTCATCGACGGACCGACAAGATGAAGATAGCGTTGACTCAT
CACCCATGGTGTTCCGAAGCGTTTACCGCAGGAAAACGGACCTTATGCCG
ACAATACCTAGCCCCCGAGACGGGCATTATGGTTCGCGAGGCTCCCTGAG
CTCGACGCCGGCCAGAACCCCAGGCTCGCGATCGGGAAATGCCACGCCCG
GCGGACACTTCAATAACTCAAGGCCCGGCAGCGCCATGTCCACATCGACA
AACATGTCCACATCCGGGCTGGTGCCCAGGCGACCGGCAACGGCACCCCG
GAAACCGAGGCCCGCCAGTATCGCCGGAACGGGCATGTCTCTCGAGGAGA
TTAACAAACTCAAGAGGGATCAGAAGCCGCCCGTGAAGACGACAGCCGCC
TCGCCATCCGCACAAACGACACCCAAACGAACTGCAAACCTTATGTCCAC
CTCCCTGATCGTGACCTCCAGCTCATCGCGGCTGAGCAGCGCCGAAAAGA
AGACGCCTTCGAAGCGGGAACCTCCGGTACCCAAGGCAGCATCAGCTTCA
AAGGCGCTGCCAAGTCGCACAGCCAGTTCCGAGCGCATCAGTAGGCTTAC
CAAGGAACCGAAAACCAAGGATACCTCTGCAATGACTAGGTCGATGATTG
TCACCAGCAGCAGTACCTCCACCATCACAAAACCAGCTCCTGCCCCGGTC
GCACCCACATCCGCTCCAGTTCCCGAGCAGAACGGTGTGGCCAAGGAGGT
AGAGAAGACTACTGCAGATGAGCCAGTTCCTGAGGCTGAAGTTCCTACCG
AGGCTCCCGTTGTTGTTCCATCAGTGAGCAAGGCTGAGAAGGAAGCATTG
AACACGGAGAAAACGGAGGAAGGGGCGCGTCAGGAGGAGGAGCAAATTTT
AGCGGTGGAATCTGTGCCCGAAGCTTTGGTTACCTCAATTAATGTAGAGG
AAAAATCGGATGAGGGCAATGAGAAGGAGGTTCCTAAGCCCCAGGAGCAG
GCTGCGCCCAAGAAACCATCGCGCAGCAAGGAGAACTCAGAGGTGCGGGA
ACTGACCCCACCAGAGGGTGCTGATCTGATGACCGCTTCGATGATGGCCA
AGAAGATCACGACCGAGGAGGAGGCCAAGGCCGCTTTGGCCGAGAGACGA
CGCCTGGCCCGCGAGGAGGCCGAACGACAGGCGGAATTAGAGCGCCAACG
ACTGGAGGCTGAACGCCTGGCAGAGATCAAAGCCCAAGAGGAGGAGGCGG
AGCGCCAACGCCTGTTCGAGGAGGAGTCCACTCGCCTGGCCGAGGAACAG
CGCCGCGGGGAGGAGGAGCGCCTGCGCAAGGCCATCGAGGAAGCCCAACA
GCGTGAGGAGGAGGAGAAACGCCGGCGCGAGGAGGAGGAGAAACAGCGCG
TGGAACGTGAGGAGGCCGAGAAGAAGGCCAAGGAGGAGGCAGAGAAGCAG
CGCGTCGAGGTGGCTGAGCGCCTTAAGCGGGAGGAGAAGGAGCGCGAGGA
ACGCCGCAAGCGGGTGGAGGCCATCATGCTGCGCACCCGCAAGGGAGGCG
CTGCCACCACACCCTCCAAGGACGCTAACGACAAAGCAGCTCCTGCCGCA
ACGGCTCCAGAGAATAATAGCAGCAGCAACAGCAGCGTCACCGGGAGCAG
CAACAACTCGGCTGAGGGCTCGCCCAGCGCAGCAGATTCCACGCCAGCAC
CAACGGCAACGGAAACTGTCCAGGAGGCGCCAAACAGTCAGGCGATGTAC
GAGCAATCGGTGCTAGACAAGGAGAACTCGCTCATCAATAGCTTCTCCAC
GATGATCATCGATGAGAATGCCAAGAACCTGCAGCAGGTGAGCAACGGCA
AGTTGCTGGTGGACTTTGAGAGCACCAATACTGTGCCGGCGGTGGCCAAC
GGCAATGGACACATCGAGAATGTCAACAACAAGAATGACATCAATCTGCT
GCAGGACGTAGTCGCTCCGGTCGCCACCCAGCTGATTGACCTGAGCATCG
AGTCACAAGATCTACACCTGAACAATAACAACAGCTTGCTGACGAGCACA
GCGGCAACCACCACGCTAGTCACTGCTGATAGTCACGAAAATAAAGATAT
ATCGCTGCTGGCAAGCTTTCTAGACCAT
BO29254.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:49:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ens-RL | 2697 | CG14998-PL | 1..2694 | 17..2710 | 13470 | 100 | Plus |
| ens-RE | 2697 | CG14998-PE | 1..2694 | 17..2710 | 13470 | 100 | Plus |
| ens-RD | 2952 | CG14998-PD | 871..2949 | 632..2710 | 10395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:49:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ens-RL | 4674 | CG14998-RL | 49..2742 | 17..2710 | 13470 | 100 | Plus |
| ens-RE | 4443 | CG14998-RE | 49..2742 | 17..2710 | 13470 | 100 | Plus |
| ens-RD | 4283 | CG14998-RD | 919..2997 | 632..2710 | 10395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:49:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4125880..4126703 | 1940..1117 | 4120 | 100 | Minus |
| 3L | 28110227 | 3L | 4125136..4125502 | 2535..2169 | 1835 | 100 | Minus |
| 3L | 28110227 | 3L | 4131955..4132214 | 377..118 | 1300 | 100 | Minus |
| 3L | 28110227 | 3L | 4125577..4125810 | 2171..1938 | 1170 | 100 | Minus |
| 3L | 28110227 | 3L | 4126989..4127164 | 947..772 | 880 | 100 | Minus |
| 3L | 28110227 | 3L | 4126761..4126932 | 1118..947 | 860 | 100 | Minus |
| 3L | 28110227 | 3L | 4124919..4125079 | 2696..2536 | 805 | 100 | Minus |
| 3L | 28110227 | 3L | 4131748..4131892 | 518..374 | 725 | 100 | Minus |
| 3L | 28110227 | 3L | 4129650..4129792 | 774..632 | 715 | 100 | Minus |
| 3L | 28110227 | 3L | 4131121..4131238 | 632..515 | 590 | 100 | Minus |
| 3L | 28110227 | 3L | 4133769..4133824 | 119..64 | 280 | 100 | Minus |
| 3L | 28110227 | 3L | 4134454..4134502 | 65..17 | 245 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 08:49:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6827 | 2213..2310 | 186 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6856 | 2185..2318 | 183 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2392..2538 | 2177..2316 | 177 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2749..2877 | 2185..2313 | 176 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2320..2421 | 2216..2316 | 174 | 64.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2341..2485 | 2177..2317 | 173 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6869 | 2177..2316 | 172 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6893 | 2150..2316 | 166 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2377..2515 | 2185..2317 | 158 | 61.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1078..1151 | 2183..2257 | 156 | 69.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6778..6980 | 2150..2369 | 153 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6823 | 2213..2318 | 152 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2823 | 2153..2664 | 147 | 53 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2321..2394 | 2183..2257 | 147 | 68 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6811..6920 | 2150..2257 | 147 | 64 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1070..1142 | 2184..2257 | 142 | 67.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1045..1130 | 2165..2257 | 124 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1516..1572 | 2206..2257 | 120 | 73.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2758..2882 | 2219..2345 | 116 | 57.8 | Plus |
BO29254.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:59 Download gff for
BO29254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ens-RE | 49..2742 | 17..2712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:13:36 Download gff for
BO29254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ens-RE | 49..2742 | 17..2712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:26:58 Download gff for
BO29254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ens-RE | 49..2742 | 17..2712 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:26:58 Download gff for
BO29254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4131956..4132212 | 120..376 | 100 | <- | Minus |
| 3L | 4133769..4133822 | 66..119 | 100 | <- | Minus |
| 3L | 4134454..4134502 | 17..65 | 100 | | Minus |
| 3L | 4124919..4125079 | 2536..2696 | 100 | <- | Minus |
| 3L | 4125136..4125500 | 2171..2535 | 100 | <- | Minus |
| 3L | 4125578..4125808 | 1940..2170 | 100 | <- | Minus |
| 3L | 4125881..4126702 | 1118..1939 | 100 | <- | Minus |
| 3L | 4126762..4126931 | 948..1117 | 100 | <- | Minus |
| 3L | 4126989..4127162 | 774..947 | 100 | <- | Minus |
| 3L | 4129651..4129791 | 633..773 | 100 | <- | Minus |
| 3L | 4131121..4131236 | 517..632 | 100 | <- | Minus |
| 3L | 4131750..4131889 | 377..516 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:13:36 Download gff for
BO29254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4124919..4125079 | 2536..2696 | 100 | <- | Minus |
| arm_3L | 4125136..4125500 | 2171..2535 | 100 | <- | Minus |
| arm_3L | 4125578..4125808 | 1940..2170 | 100 | <- | Minus |
| arm_3L | 4125881..4126702 | 1118..1939 | 100 | <- | Minus |
| arm_3L | 4126762..4126931 | 948..1117 | 100 | <- | Minus |
| arm_3L | 4126989..4127162 | 774..947 | 100 | <- | Minus |
| arm_3L | 4129651..4129791 | 633..773 | 100 | <- | Minus |
| arm_3L | 4131121..4131236 | 517..632 | 100 | <- | Minus |
| arm_3L | 4131750..4131889 | 377..516 | 100 | <- | Minus |
| arm_3L | 4131956..4132212 | 120..376 | 100 | <- | Minus |
| arm_3L | 4133769..4133822 | 66..119 | 100 | <- | Minus |
| arm_3L | 4134454..4134502 | 17..65 | 100 | | Minus |
BO29254.pep Sequence
Translation from 16 to 2728
> BO29254.pep
MASLGGQHGNISTNPEVENTAKRPESREGSAERKASKDREEKLKYARDRQ
NEERHRKIEELRAQAEAAQRYREQKEEERRRRIEEIRTRDTEKRHQVEER
KKAIFEAEKERREYILKKNQERESRIEVKKRDRNSIGFAFGSSTPRLLDV
PADYGLVSPSAFWGQRRSTSISNVAGASLTRRSSERELADSGAKKRASSS
TDRQDEDSVDSSPMVFRSVYRRKTDLMPTIPSPRDGHYGSRGSLSSTPAR
TPGSRSGNATPGGHFNNSRPGSAMSTSTNMSTSGLVPRRPATAPRKPRPA
SIAGTGMSLEEINKLKRDQKPPVKTTAASPSAQTTPKRTANLMSTSLIVT
SSSSRLSSAEKKTPSKREPPVPKAASASKALPSRTASSERISRLTKEPKT
KDTSAMTRSMIVTSSSTSTITKPAPAPVAPTSAPVPEQNGVAKEVEKTTA
DEPVPEAEVPTEAPVVVPSVSKAEKEALNTEKTEEGARQEEEQILAVESV
PEALVTSINVEEKSDEGNEKEVPKPQEQAAPKKPSRSKENSEVRELTPPE
GADLMTASMMAKKITTEEEAKAALAERRRLAREEAERQAELERQRLEAER
LAEIKAQEEEAERQRLFEEESTRLAEEQRRGEEERLRKAIEEAQQREEEE
KRRREEEEKQRVEREEAEKKAKEEAEKQRVEVAERLKREEKEREERRKRV
EAIMLRTRKGGAATTPSKDANDKAAPAATAPENNSSSNSSVTGSSNNSAE
GSPSAADSTPAPTATETVQEAPNSQAMYEQSVLDKENSLINSFSTMIIDE
NAKNLQQVSNGKLLVDFESTNTVPAVANGNGHIENVNNKNDINLLQDVVA
PVATQLIDLSIESQDLHLNNNNSLLTSTAATTTLVTADSHENKDISLLAS
FLDH
BO29254.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:05:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ens-PL | 898 | CG14998-PL | 1..898 | 1..898 | 4437 | 100 | Plus |
| ens-PE | 898 | CG14998-PE | 1..898 | 1..898 | 4437 | 100 | Plus |
| ens-PI | 933 | CG14998-PI | 1..933 | 1..898 | 4119 | 91.8 | Plus |
| ens-PB | 851 | CG14998-PB | 1..851 | 1..898 | 4103 | 94.2 | Plus |
| ens-PH | 848 | CG14998-PH | 1..848 | 1..898 | 4076 | 93.9 | Plus |
