BO29263.complete Sequence
3847 bp assembled on 2011-09-19
GenBank Submission: KX795935
> BO29263.complete
GAAGTTATCAGTCGACATGGATGTGGCGAAGCTGGAGAAGATGAAGGTGG
TGGACCTGCGCAACGAGCTCCAGTCGCGCGGCCTGGACACCAAAGGAGTC
AAAGCGGTGCTCGTCGAGCGCCTGAGGGCATATGTGGAAGGAGGAGCCGG
CGACGGTGAAAATGCGCCGGTCACACCAAGCCGCCGTCAGCGTCGCACGC
GCTCTATGTCCCGCTCTCCATCGCCGGTGCAAGCTGCTCCCGTGGCCGCA
GAACCAGTGCTCGATACTCTCGAAGAGGAGGAGCAGCCGGAGGATAAGAC
AGTGCCACAGCCAGAACCAGAAAGTGAACAGCCAGCAGCCGAGCCGGAAC
CAGAACAAAGTGAGCCGGAGGAAGCTGAGCCAGCTGCAGCAGTGACAGAG
GACACAACCGTCAACCAAGCGGTCAATGAGGAGTCGCAGCCTGAGCCCGA
AGAGTTTGATGAAAAGTCGGAGACAGACGACAAGCAGGAGACAATCGAAG
AGGCAGTACCCGCCGTCGTACCACAGAATGAAGTGGCTGATGAACCCATG
GAAGAGGATCATGATGCTGCCCCTGAGGAGCAGGAACCTACACAAACTGA
GGAGCCTGTAGAGGAGAAACCAGCCGAGAGCACTGTGGCCGAGCATCAGT
CAAATGGCGACAGCCAGAAAATGGACGTTGATGAGGAGGATTCGGCCGCC
CCGAAAACGGCGGAGGAGACCGAGCCAGCAGCTAAGCCTGAGGATCAGCC
CCCGGAACGCCGCAAGCGATCACACAGTCGGTCCAAATCCCGATCGCGCA
GTGGCTCCCGCTCGTCCAAACATCGCGGCAGCGTAGGTGACAAGCGTGAG
TCAAAGGCAGCGGCCGAGGAACGCACAGTTCCTGAGGACGAGCCAACCAT
CGAGGAGAACAAAGTCGGATTGAGCTGGCTGGACTCTGACTTGCATTTAC
GCATCGACCCAACCACGTTTGCATCGGCCAAACCCCTGACATCGGAAATT
TACTCGCTTATTTGGTCCGGAGCCCGCGCAAACTACGGAGTGCGCGAAGG
CAAAGTGTGCTTTGAGGTGCGCCTTTCCGAGGAGTCGGTGCCGGAGAACT
CGCACTACTTCCGCGATGAGCCGCATGTGCGAGGATTCCGCGTGGGATTT
TCAATGCCCAAGAGCTCCTTGTTGCTAGGCGAGGCCGAGCATTCATTTGG
CTATTGCGAGACCGGGCGTAAGGCTACTCAGAGCGAGTTTACCGATTACG
GCAAGCCTTACCAGCTGGATGACGTTATCGGCTGCTATTTAGATCTGGAA
AGTGAGCCGTGCACAATTAACTACACTCTGAACGGCGAGGATCTTGGAGT
TGCGTTCGAGTTTGAGAAGAGCATACTGGGCGAGGAGGGAGCCCTGTTTC
CGCACATCGTTACCAAGGGCTACGAATACTTAGTGAATTTCTCTGACACC
GAGCAGCTGTTGGTGAATGCCGAGAGGCCCACGCGCAAGCGCCGCAAGCC
ACGTAAAGACGAAGACAAGGATAAGGACGACGATAAGGATGACAACGATG
GCGAGAAGTGGAAGGTCTTGGACGAAGCCACGGCGGATGATGATGAGGTG
GAGAAAAAGGATGAAGATGGCAAGGCTTCTTCGGAGAAAGATGAAGAGGA
AGCCGAAGATCCTGAAAAAGCCAAAGAGGATGAGGCGGCGCCAAAAACGG
AAACAGAAGCCGAAACTAAAGTCGAGGCTCCTGCTGAAGCTGCTAAGCCC
GAATCAGAAGCTACCGAGGCTTCGGAAACTGCTGAAACTTCTACCGAAAA
GTCGTCAGAAACTGCAGCTGTGTCAAATGGTGATGCTGCTGCAGAACAGG
CAAACGATGAAAAGGCATCTGAGGATAAGAAACCCTCCGAAAACAATGAT
GAAGAAGATGAGGATGGCCCCTCGCCGAACAAGCGACCCAAAACCGATGG
AGATTCGGAAAAGGCTGAATCCGAAAAGGAAAAGGACAGGTCGCAGACGA
CCGAAGATGAGTACGAGGATGTCGTGCCCGAGCCAAGGGATACAGCTGCC
CTGCTGGAAGGCTATGTATTGATCGGCTTAGTACCTGTCGAAAAGCTGGT
TTCCGGTCCACAACGCGTCGGATCTCGCAAGGAGTGCGAAGTCATTTTAC
TGGTTGGCTTGCCAGGAGCCGGAAAGACCCATTGGGCCCATAAGCATGTG
GCCGAGAATGCTGACAAGCGTTACGAGTTGATTGGACCCGACGCATTCAT
TTCAAAGATGACAATCGATGGCGCCTCTCGCAAGACTGTGCACAAAGGTC
GATGGGACAAGGTGTACGAGATATGCTTAAATAGCTTGGCGGCTCTGGAA
GATATTGCCATGAAGCGGCGTCGAAATTTCATACTTGATCAGACCAATGT
GTATGCCTCGGCCCAGCGACGTAAAATGAAGGGTTTTAACGACTTCAAGC
GAATTGCGGTCGTTTGCATACCCAGCGAAGATGAATTGAAACGTCGCATC
GCCGAAAAAGAGGAAAAGGGAAATGCTTTTACAGTTAAAGAATCAACAAT
TAATAATTTACGAGCCAACTTCACACTTCCCTCGCTGGAGTTTGGCTGGT
TCGATGATATAAACTACACGGAGCTGACTGGTGACGAGGCCAAGAGCGAG
GTCAAGAAGTACAACGAGAAGGGCAAAAAGGCCATTGACGCGGAGAGGTC
GCGTGACAAGAGATCCCGAGGAAGTCGCGACAACTATCGTCGTGATGACC
GGAACCGGAATCGATACAATGATGACCGACGTCGTGATTATGGCGGCCAG
CGGCACGAAAGTCGTTGGAGCGACTCCCGCAGGGGAGGCGGCGGTGGCGG
TTACTCCAGCAATAGTGGTGGAGGCGGCAGTCGTGGCTACGACAATCGCC
GCAACTACAACAGCGGTAGCGGTGGCCAGCAAAATTGGGTGCAGAACAGC
CGCAGAAGCGGGTACGATGATCGCGGCTATGGTGGCGGTGGAAGCGGCAG
TCGTGGATACGACAATCGCAACCGTGGATACGCAGGCGGCAGCGGTGGTG
GTGGCGGCGGCGGCGGTGGTGGTGGTGGTGGTGGTGGTCAGCAAAACTGG
ATGCAGAACAACCGCAGAAGTGGGTATGACGACCGCGGCTACGGCAGCTC
GCGGGACTATCGCGATCGAGACCGTGGCAACGACCGCAGTCGAATGGGCA
GTAACGACCGGAACCGGGGCAGCAGCCAGAGTAGCTATCGCTCGGGAGGT
GGTACTCATCAACAACGGGATTTTCGGCCTGGCCACCGCGACACCAAAGA
AGATAGTCGCGGTGGCTATGAGCGGTCAGCTGGTCAATCGCTACCCAAGT
ATGGCAATAACACCGCTGTAGGCGGTGGCTACGATCAGTACAAGCAACAA
GGTGGAGCACCTGGCGGAGGCAAGGCCTCCCTTAGCGGCAAGTGGAGTAC
GTACAGTCAACACCATCAGCAACAGCAGGCGCCGCAGCATCAACAAACGG
GCATCTGGCAGACTCAGCAGCAGTCACAACAATACCAACAACCTCAGCAA
GCAGCGGCGGGCCAGCAACAATACTGGGCCTATAACCAAATGCAGACAGG
TTATGGCAACCAACAGGCCTGGCAGAGTGCCGATCCGCAGCAGCAACAAC
AGTGGATGTCCTGGTGGCAGCAGCAGCAGGGCTCTGGCGGAGCAGCGGCT
GGGAATGCCAGTGGCGGATCAGGCGTAAATGTCGGCGGCGGCGCTGGCAA
TAATGATGGCGGTGCCGCCAATCATTACTGGTCTCAATATTCGTACTCCA
CGCAGTCCAATGCGGGTGCCGACAAGAAGGCAAGCTTTCTAGACCAT
BO29263.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:54:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30122-RD | 3816 | CG30122-PD | 1..3813 | 17..3829 | 19065 | 100 | Plus |
| CG30122-RC | 3819 | CG30122-PC | 1..3816 | 17..3829 | 19000 | 99.9 | Plus |
| CG30122-RB | 3816 | CG30122-PB | 1..3813 | 17..3829 | 18920 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:54:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30122-RD | 4620 | CG30122-RD | 311..4123 | 17..3829 | 19065 | 100 | Plus |
| CG30122-RC | 4623 | CG30122-RC | 311..4126 | 17..3829 | 19000 | 99.9 | Plus |
| CG30122-RB | 4620 | CG30122-RB | 311..4123 | 17..3829 | 18920 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:54:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18633425..18634287 | 3425..2563 | 4315 | 100 | Minus |
| 2R | 25286936 | 2R | 18636884..18637739 | 1785..930 | 4265 | 99.9 | Minus |
| 2R | 25286936 | 2R | 18637847..18638618 | 929..158 | 3860 | 100 | Minus |
| 2R | 25286936 | 2R | 18636340..18636822 | 2263..1781 | 2415 | 100 | Minus |
| 2R | 25286936 | 2R | 18633192..18633365 | 3596..3423 | 870 | 100 | Minus |
| 2R | 25286936 | 2R | 18634770..18634943 | 2564..2391 | 870 | 100 | Minus |
| 2R | 25286936 | 2R | 18632825..18632987 | 3829..3667 | 815 | 100 | Minus |
| 2R | 25286936 | 2R | 18638819..18638960 | 158..17 | 710 | 100 | Minus |
| 2R | 25286936 | 2R | 18636143..18636271 | 2392..2264 | 645 | 100 | Minus |
| 2R | 25286936 | 2R | 18633054..18633127 | 3670..3597 | 370 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 08:54:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6923 | 3460..3677 | 230 | 62.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2510 | 3458..3652 | 216 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6861 | 3434..3570 | 204 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6768..6890 | 3434..3558 | 188 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6747..6888 | 3434..3570 | 183 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2367..2495 | 3458..3591 | 153 | 63.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1053..1163 | 3425..3542 | 152 | 63.3 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 155..198 | 3638..3681 | 139 | 79.5 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9185..9228 | 3638..3681 | 139 | 79.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2309..2667 | 3171..3533 | 138 | 54.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1095..1158 | 3434..3495 | 135 | 70.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6847 | 3516..3652 | 130 | 62.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1100..1178 | 3458..3534 | 119 | 66.2 | Plus |
BO29263.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:43:00 Download gff for
BO29263.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30122-RD | 309..4121 | 17..3831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:14:05 Download gff for
BO29263.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30122-RD | 311..4123 | 17..3831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:28:23 Download gff for
BO29263.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30122-RD | 311..4123 | 17..3831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:28:23 Download gff for
BO29263.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18632823..18632983 | 3671..3831 | 98 | <- | Minus |
| 2R | 18633054..18633127 | 3597..3670 | 100 | <- | Minus |
| 2R | 18633192..18633363 | 3425..3596 | 100 | <- | Minus |
| 2R | 18633426..18634285 | 2565..3424 | 100 | <- | Minus |
| 2R | 18634770..18634941 | 2393..2564 | 100 | <- | Minus |
| 2R | 18636143..18636271 | 2264..2392 | 100 | <- | Minus |
| 2R | 18636340..18636821 | 1782..2263 | 100 | <- | Minus |
| 2R | 18636888..18637739 | 930..1781 | 100 | <- | Minus |
| 2R | 18637847..18638617 | 159..929 | 100 | <- | Minus |
| 2R | 18638819..18638960 | 17..158 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:14:05 Download gff for
BO29263.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14520559..14520632 | 3597..3670 | 100 | <- | Minus |
| arm_2R | 14520328..14520488 | 3671..3831 | 98 | <- | Minus |
| arm_2R | 14520697..14520868 | 3425..3596 | 100 | <- | Minus |
| arm_2R | 14520931..14521790 | 2565..3424 | 100 | <- | Minus |
| arm_2R | 14522275..14522446 | 2393..2564 | 100 | <- | Minus |
| arm_2R | 14523648..14523776 | 2264..2392 | 100 | <- | Minus |
| arm_2R | 14523845..14524326 | 1782..2263 | 100 | <- | Minus |
| arm_2R | 14524393..14525244 | 930..1781 | 100 | <- | Minus |
| arm_2R | 14525352..14526122 | 159..929 | 100 | <- | Minus |
| arm_2R | 14526324..14526465 | 17..158 | 100 | | Minus |
BO29263.pep Sequence
Translation from 16 to 3847
> BO29263.pep
MDVAKLEKMKVVDLRNELQSRGLDTKGVKAVLVERLRAYVEGGAGDGENA
PVTPSRRQRRTRSMSRSPSPVQAAPVAAEPVLDTLEEEEQPEDKTVPQPE
PESEQPAAEPEPEQSEPEEAEPAAAVTEDTTVNQAVNEESQPEPEEFDEK
SETDDKQETIEEAVPAVVPQNEVADEPMEEDHDAAPEEQEPTQTEEPVEE
KPAESTVAEHQSNGDSQKMDVDEEDSAAPKTAEETEPAAKPEDQPPERRK
RSHSRSKSRSRSGSRSSKHRGSVGDKRESKAAAEERTVPEDEPTIEENKV
GLSWLDSDLHLRIDPTTFASAKPLTSEIYSLIWSGARANYGVREGKVCFE
VRLSEESVPENSHYFRDEPHVRGFRVGFSMPKSSLLLGEAEHSFGYCETG
RKATQSEFTDYGKPYQLDDVIGCYLDLESEPCTINYTLNGEDLGVAFEFE
KSILGEEGALFPHIVTKGYEYLVNFSDTEQLLVNAERPTRKRRKPRKDED
KDKDDDKDDNDGEKWKVLDEATADDDEVEKKDEDGKASSEKDEEEAEDPE
KAKEDEAAPKTETEAETKVEAPAEAAKPESEATEASETAETSTEKSSETA
AVSNGDAAAEQANDEKASEDKKPSENNDEEDEDGPSPNKRPKTDGDSEKA
ESEKEKDRSQTTEDEYEDVVPEPRDTAALLEGYVLIGLVPVEKLVSGPQR
VGSRKECEVILLVGLPGAGKTHWAHKHVAENADKRYELIGPDAFISKMTI
DGASRKTVHKGRWDKVYEICLNSLAALEDIAMKRRRNFILDQTNVYASAQ
RRKMKGFNDFKRIAVVCIPSEDELKRRIAEKEEKGNAFTVKESTINNLRA
NFTLPSLEFGWFDDINYTELTGDEAKSEVKKYNEKGKKAIDAERSRDKRS
RGSRDNYRRDDRNRNRYNDDRRRDYGGQRHESRWSDSRRGGGGGGYSSNS
GGGGSRGYDNRRNYNSGSGGQQNWVQNSRRSGYDDRGYGGGGSGSRGYDN
RNRGYAGGSGGGGGGGGGGGGGGGQQNWMQNNRRSGYDDRGYGSSRDYRD
RDRGNDRSRMGSNDRNRGSSQSSYRSGGGTHQQRDFRPGHRDTKEDSRGG
YERSAGQSLPKYGNNTAVGGGYDQYKQQGGAPGGGKASLSGKWSTYSQHH
QQQQAPQHQQTGIWQTQQQSQQYQQPQQAAAGQQQYWAYNQMQTGYGNQQ
AWQSADPQQQQQWMSWWQQQQGSGGAAAGNASGGSGVNVGGGAGNNDGGA
ANHYWSQYSYSTQSNAGADKKASFLDH
BO29263.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:05:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30122-PD | 1271 | CG30122-PD | 1..1271 | 1..1271 | 6718 | 100 | Plus |
| CG30122-PC | 1272 | CG30122-PC | 1..1272 | 1..1271 | 6706 | 99.9 | Plus |
| CG30122-PB | 1271 | CG30122-PB | 1..1271 | 1..1271 | 6684 | 99.8 | Plus |
| Ddx1-PA | 727 | CG9054-PA | 117..245 | 333..479 | 213 | 35.1 | Plus |
| Fmr1-PI | 639 | CG6203-PI | 267..604 | 826..1177 | 209 | 28.3 | Plus |
