BO29278.complete Sequence
439 bp assembled on 2011-08-26
GenBank Submission: KX795940
> BO29278.complete
GAAGTTATCAGTCGACATGGGAAAGAAAGACAAGAACAAGGAACAGGCGG
ACGCTGCACCAGCTGGCGATGCACCACCCAATGCCGGAGCCCCGGCCGGA
GAGGGCGGCGATGGCGAGATTGTGGGCGGACCACACAATCCGCAGCAGAT
CGCGGCACAGAAGCGTCTGCAGCAGACGCAGGCGCAGGTCGATGAGGTCG
TGGACATCATGCGCACGAACGTGGAGAAGGTGCTGGAGCGCGACAGCAAG
CTGTCGGAGCTGGACGACCGTGCCGATGCCTTGCAGCAGGGTGCCTCGCA
GTTTGAGCAGCAGGCGGGCAAGCTCAAGAGGAAATTCTGGCTTCAGAACT
TAAAGATGATGATCATCATGGGCGTGATTGGCCTGGTTGTCGTGGGCATT
ATTGCAAAGAAAGACGAAGAAGCAAGCTTTCTAGACCAT
BO29278.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:50:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nSyb-RI | 408 | CG17248-PI | 1..405 | 17..421 | 2025 | 100 | Plus |
nSyb-RH | 408 | CG17248-PH | 1..405 | 17..421 | 2025 | 100 | Plus |
nSyb-RG | 579 | CG17248-PG | 1..396 | 17..412 | 1965 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nSyb-RI | 3570 | CG17248-RI | 527..931 | 17..421 | 2025 | 100 | Plus |
nSyb-RH | 1277 | CG17248-RH | 527..931 | 17..421 | 2025 | 100 | Plus |
nSyb-RG | 3027 | CG17248-RG | 530..925 | 17..412 | 1965 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1635301..1635461 | 355..195 | 805 | 100 | Minus |
3L | 28110227 | 3L | 1635532..1635684 | 198..46 | 765 | 100 | Minus |
2R | 25286936 | 2R | 10250908..10251119 | 378..167 | 295 | 75.9 | Minus |
3L | 28110227 | 3L | 1635186..1635239 | 407..354 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:50:26 has no hits.
BO29278.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-26 13:54:54 Download gff for
BO29278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
n-syb-RH | 542..946 | 17..423 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:35:51 Download gff for
BO29278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
n-syb-RH | 527..931 | 17..423 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:11:09 Download gff for
BO29278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nSyb-RH | 527..931 | 17..423 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:11:09 Download gff for
BO29278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1635301..1635459 | 197..355 | 100 | <- | Minus |
3L | 1635534..1635684 | 46..196 | 100 | <- | Minus |
3L | 1635937..1635965 | 17..45 | 100 | | Minus |
3L | 1635186..1635237 | 356..407 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:35:51 Download gff for
BO29278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1635301..1635459 | 197..355 | 100 | <- | Minus |
arm_3L | 1635186..1635237 | 356..407 | 100 | <- | Minus |
arm_3L | 1635534..1635684 | 46..196 | 100 | <- | Minus |
arm_3L | 1635937..1635965 | 17..45 | 100 | | Minus |
BO29278.pep Sequence
Translation from 16 to 439
> BO29278.pep
MGKKDKNKEQADAAPAGDAPPNAGAPAGEGGDGEIVGGPHNPQQIAAQKR
LQQTQAQVDEVVDIMRTNVEKVLERDSKLSELDDRADALQQGASQFEQQA
GKLKRKFWLQNLKMMIIMGVIGLVVVGIIAKKDEEASFLDH
BO29278.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:00:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nSyb-PI | 135 | CG17248-PI | 1..135 | 1..135 | 682 | 100 | Plus |
nSyb-PH | 135 | CG17248-PH | 1..135 | 1..135 | 682 | 100 | Plus |
nSyb-PG | 192 | CG17248-PG | 1..132 | 1..132 | 661 | 99.2 | Plus |
nSyb-PE | 192 | CG17248-PE | 1..132 | 1..132 | 661 | 99.2 | Plus |
nSyb-PK | 125 | CG17248-PK | 2..121 | 11..130 | 603 | 100 | Plus |