BO29294.complete Sequence
2959 bp assembled on 2011-10-14
GenBank Submission: KX793996
> BO29294.complete
GAAGTTATCAGTCGACATGGTGGAAAATATATCACTGAATGTTACTGTAA
AGTCGTCGGCTCGGAAAAATCAACAGCAGTCGCCCGCGCTTTCGGTTAAA
AAACGTGCACAGAAATCCCAGGATTTCGACTTTCAATTCAATGTGGACAA
GCCCAAAGTCAAGGCAATCGTTGTGCGAAGAAGGGCGCCTCCTTCGAAAG
TTGAACCTACAAATTCATCAGTTCCCAATACCACGAAATCGCCGACGCCT
TCAGTTTCCTCCAGCAAATCCGCAATTTCCACTCTTTCAGCATCCCCCAA
AGCAAATGCATCCAACGATGATCTTATGTTCAATGTTAGCCCAACGAAAC
CACCTGTTAAGAGCGTTTTAGGCGACGATTTCATGCTAAATGTGACCACA
AAGCCGGTGGTTGCCCAGAAAGCCAAGCCAAAAATCACACGAGCCGAAAG
ATTGGGCAAGAAACAGAGGCAGGGCAAGCCACTGACGAAGCTCAGCGAAG
AGCAGATCACGCGGGCGCTGAAGAGCAACAAAAAGCCAAAAAATCCAAAT
CAATTACCCACGCCCGGTGACCTTTTCCGCGCTCAACTGGAGGAGGAGAG
GCGGCAAAAGCGTCGTGAAGAGGGAGGAGGGGATCAGGAAGCCAGCGCCG
ATGAGGAGGATGCGAAGAACAACTCAGGAGGGGGATCTCCGAGGGTAAAA
CCGAGTTCAGCCGTTAAGGAGTCCAAAAAGTCATCAGATATTGAGGATTC
CGGCGAATCCGGCGAAGAATCTGCAACATCCGATGAGGAACCAGATGAAT
CCAGTGCACAATCTCCTGGACAAGAAAAGGAACCCAAACAAACCGCGAAG
AAACCACCGAAAGCCGAGGAAACCTCGTCCACAAACCGTTTTCGCACCAA
GAAGATCGGCCTCTTCGACCAAAGCGACGTGGAGGCACTCAAGCAACTGG
GCCAAAGAGCGGTGAAGCCCGTCAAGGAGACCATCTTTACAGGCTCTAAA
ATATCCACGTTGGGACTGCATCCTCATGCTGTAAAGAACTTGGAGGATCT
GCTTAGCATTCGAGAGCTAACTAGCGTGCAGCAGAAGACCATTCCCGAAG
TTCTCCAGGGCAAGGATGTGCTCGTACGTTCGCAGACGGGCTCGGGAAAG
ACCCTGGCATATGCTCTACCCTTGGTGGAACTGTTGCAGAAACAGCAGCC
ACGGATACAGCGAAAGGATGGCGTGCTGGCCCTGGTGATTGTACCCACCA
GGGAGCTGGTGATGCAGACATACGAACTCATCCAGAAGCTGGTCAAGCCG
TACACATGGATAGTGCCCGGTTCTTTGCTGGGTGGCGAGAGCAGGAAAAG
CGAAAAGGCCAGGCTAAGAAAGGGCATCAACATACTGATAGGCACACCTG
GTCGTCTGGTGGATCACCTGCTGCACACGGCCTCCTTCAAGCTGACCAAA
CTGCAGTTCCTCATACTGGACGAAGCAGATCGCCTGCTGGAGCTGGGCTA
CGAACGCGATGTCAAGCAGTTGGTGGAGGCCATTGACAAGCAGCGTGCGG
AGTGCGAGGACAAGGAGCTTCCCCAGCTGCAAAGGATGCTGCTGAGTGCC
ACTTTGACTTCGCAGGTCCAACAGCTGGCCGGTTTGACCCTCAAGAATCC
CCTGTACATAGACAACAGCGACGAGGCGGCGAGTGCGGCGCTGAAGAGCA
AGGATGGCTACCAAAAGGAGACCATAGAAGCCTTGCTAGAGGTGGACGAC
GGACTGGGCGAGTACCAGGAGGATGTGACGGGTGTGCTGAGTATTCCCGA
GAACCTGCAGCTCAGCTATGTGGTGGTGCCGCCAAAACTACGTCTGGTGG
CACTGTCTTCGCTGCTGGCCAAGGAAGTGGACGCCAGTCCCAAGCAGTTC
AAGGCGATTGTGTTCATGAGCACCACGGAGATGGTGAACTTCCATCACGA
CATGCTCAACGAGGCGTTGACCAGGCGAGTTCTCGACGAGGAGGACGAGC
AGGAGAAAGGTGATTCGGATGACGACGGCGACATACCTTTACTGCAGGGT
CTGCGCTTCTTCAAACTACATGGCTCCATGACGCAGACGGAACGGCAGGG
CGTTTTTCGTGGCTTCCGCGATTGCGCCAGCTGCGTCCTGCTGGCCACCG
ATGTGGTGGGTCGTGGCATCGATGTTCCCGACATAAAACTGGTGGTGCAG
TACACGCCGCCGCAAACCACCGCCGATTTTGTTCACCGCGTGGGTCGAAC
GGCTCGAGCGGGCCGAAAGGGCAGAGCCGTGCTCTTCCTGACGCCCAGCG
AGGCCCAGTTCGTGCGGCATCTGGAGAAGAAGCGCATCCGCATCCAGCAG
GGCGACATGTACGCCTACCTGCAGACCCTGCTGCCCAAGGACGATGAGGC
CAGGACGGTGCAGGAGGCGGCCTCCAATCTGCAGCACAAGTTCCAGACGC
TGCTCGAGGATGATCGCGAACTACACGACAAGTCCTGCAAAGCCTTTGTG
TCCTGGATGAAGTTCTACTCGACGTTTCCCAAGGAGCTGAAGCCCATCTT
CAACGTGCGCATCGCCCACATGGGCCACTTCGCCAAGAGCTTTGCGCTCA
AGGAGGCGCCCTCAAAGTTCGCCGCCAAGCACGCCGCCCCCAAGGCGGCC
CCGCCCACCAACCGACTGACCTACACGGAGAGAGATCCCGAGAAGATCCA
GGCCCAGAAGCGGGCCAAGCGGCGATTCACGACGACGGTCAGCGGGGAGG
TGCGACAGCTGCAGCAGCGGGACGTAGGAGCGCAGAAGCCAGGAGCCCCA
CCACCCAAGGGTGGTTTCATTGGCGGCGGAGTGGGACGCAGCAGCTTCAT
GAAGAGCCTGGGCAAATCGAGGGCGCTGAATATGTCCGAGTTCGACAGCG
GACTGCCACCGGAGGGAGCCGCCAAGCGACGCAAGCAGGCGGCAAGCTTT
CTAGACCAT
BO29294.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:47:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8611-RB | 2928 | CG8611-PB | 1..2925 | 17..2941 | 14625 | 100 | Plus |
| CG8611-RA | 2925 | CG8611-PA | 1..2922 | 17..2941 | 14545 | 99.9 | Plus |
| CG8611-RC | 2487 | CG8611-PC | 1..2476 | 17..2492 | 12380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:47:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8611-RB | 4145 | CG8611-RB | 104..3028 | 17..2941 | 14625 | 100 | Plus |
| CG8611-RA | 3614 | CG8611-RA | 104..3025 | 17..2941 | 14545 | 99.9 | Plus |
| CG8611-RC | 3917 | CG8611-RC | 104..2579 | 17..2492 | 12380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:47:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17419936..17421926 | 2064..74 | 9955 | 100 | Minus |
| X | 23542271 | X | 17419448..17419875 | 2492..2065 | 2140 | 100 | Minus |
| X | 23542271 | X | 17414384..17414644 | 2941..2681 | 1305 | 100 | Minus |
| X | 23542271 | X | 17414970..17415161 | 2682..2491 | 960 | 100 | Minus |
| X | 23542271 | X | 17421983..17422042 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:47:54 has no hits.
BO29294.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:57:20 Download gff for
BO29294.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8611-RB | 114..3038 | 17..2943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:37:02 Download gff for
BO29294.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8611-RB | 104..3028 | 17..2943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:42:30 Download gff for
BO29294.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8611-RB | 104..3028 | 17..2943 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:42:30 Download gff for
BO29294.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17414382..17414642 | 2683..2943 | 99 | <- | Minus |
| X | 17414970..17415159 | 2493..2682 | 100 | <- | Minus |
| X | 17419448..17419875 | 2065..2492 | 100 | <- | Minus |
| X | 17419936..17421923 | 77..2064 | 100 | <- | Minus |
| X | 17421983..17422042 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:37:02 Download gff for
BO29294.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17308415..17308675 | 2683..2943 | 99 | <- | Minus |
| arm_X | 17309003..17309192 | 2493..2682 | 100 | <- | Minus |
| arm_X | 17313481..17313908 | 2065..2492 | 100 | <- | Minus |
| arm_X | 17313969..17315956 | 77..2064 | 100 | <- | Minus |
| arm_X | 17316016..17316075 | 17..76 | 100 | | Minus |
BO29294.pep Sequence
Translation from 16 to 2959
> BO29294.pep
MVENISLNVTVKSSARKNQQQSPALSVKKRAQKSQDFDFQFNVDKPKVKA
IVVRRRAPPSKVEPTNSSVPNTTKSPTPSVSSSKSAISTLSASPKANASN
DDLMFNVSPTKPPVKSVLGDDFMLNVTTKPVVAQKAKPKITRAERLGKKQ
RQGKPLTKLSEEQITRALKSNKKPKNPNQLPTPGDLFRAQLEEERRQKRR
EEGGGDQEASADEEDAKNNSGGGSPRVKPSSAVKESKKSSDIEDSGESGE
ESATSDEEPDESSAQSPGQEKEPKQTAKKPPKAEETSSTNRFRTKKIGLF
DQSDVEALKQLGQRAVKPVKETIFTGSKISTLGLHPHAVKNLEDLLSIRE
LTSVQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRK
DGVLALVIVPTRELVMQTYELIQKLVKPYTWIVPGSLLGGESRKSEKARL
RKGINILIGTPGRLVDHLLHTASFKLTKLQFLILDEADRLLELGYERDVK
QLVEAIDKQRAECEDKELPQLQRMLLSATLTSQVQQLAGLTLKNPLYIDN
SDEAASAALKSKDGYQKETIEALLEVDDGLGEYQEDVTGVLSIPENLQLS
YVVVPPKLRLVALSSLLAKEVDASPKQFKAIVFMSTTEMVNFHHDMLNEA
LTRRVLDEEDEQEKGDSDDDGDIPLLQGLRFFKLHGSMTQTERQGVFRGF
RDCASCVLLATDVVGRGIDVPDIKLVVQYTPPQTTADFVHRVGRTARAGR
KGRAVLFLTPSEAQFVRHLEKKRIRIQQGDMYAYLQTLLPKDDEARTVQE
AASNLQHKFQTLLEDDRELHDKSCKAFVSWMKFYSTFPKELKPIFNVRIA
HMGHFAKSFALKEAPSKFAAKHAAPKAAPPTNRLTYTERDPEKIQAQKRA
KRRFTTTVSGEVRQLQQRDVGAQKPGAPPPKGGFIGGGVGRSSFMKSLGK
SRALNMSEFDSGLPPEGAAKRRKQAASFLDH
BO29294.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:32:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8611-PB | 975 | CG8611-PB | 1..975 | 1..975 | 4913 | 100 | Plus |
| CG8611-PA | 974 | CG8611-PA | 1..974 | 1..975 | 4896 | 99.9 | Plus |
| CG8611-PC | 828 | CG8611-PC | 1..825 | 1..825 | 4135 | 100 | Plus |
| pit-PC | 680 | CG6375-PC | 11..645 | 139..884 | 689 | 27.4 | Plus |
| pit-PA | 680 | CG6375-PA | 11..645 | 139..884 | 689 | 27.4 | Plus |
