BO29295.complete Sequence
1123 bp assembled on 2011-08-26
GenBank Submission: KX799995
> BO29295.complete
GAAGTTATCAGTCGACATGGCGCTATGCCAGACATCGGTGCTGAAGGTGT
ACCATGCCGTGATCGAGGACGTCATCACAAATGTGCGGGACGCGTTCCTG
GACGAGGGCGTCGACGAACAGGTGCTGCAGGAGATGAAGCAGGTCTGGCG
CAACAAGTTGCTTGCTAGCAAGGCCGTCGAGCTGAGCCCGGACTCCGGCG
ATGGCTCCCATCCGCCACCCATCGTGGCCAACAATCCAAAGGCAGCGAAT
GCCAAGGCCAAGAAGGCCGCCGCCGCAACCGCGGTCACATCACACCAACA
TATCGGCGGCAACAGCTCCATGTCCTCGCTGGTGGGGCTTAAGTCGTCCG
CTGGAATGGCCGCCGGCAGCGGCATAAGGAACGGGCTGGTGCCCATCAAG
CAGGAAGTCAACTCACAGAATCCACCGCCACTGCATCCTACCTCGGCTGC
AAGCATGATGCAGAAACAGCAGCAGGCGGCGAGCAGTGGACAGGGTTCCA
TTCCAATTGTGGCCACGCTGGACCCCAATCGCATTATGCCTGTTAACATC
ACGCTGCCATCGCCAGCCGGCTCTGCCAGTTCGGAATCTCGAGTGCTCAC
CATACAAGTGCCTGCCTCCGCGCTGCAGGAGAATCAGTTGACCCAAATTC
TGACGGCCCACCTGATTTCATCCATCATGTCCTTGCCCACCACGTTGGCC
TCGTCTGTGCTTCAGCAGCACGTAAACGCAGCGCTAAGCAGCGCCAATCA
CCAGAAAACTCTTGCCGCCGCCAAGCAATTGGACGGTGCCCTGGACTCCT
CCGATGAGGATGAAAGCGAGGAGAGCGACGACAACATCGACAACGATGAC
GACGATGACCTAGACAAGGACGATGACGAGGATGCGGAGCACGAGGATGC
TGCCGAGGAGGAGCCGCTCAACAGCGAAGACGATGTCACCGACGAAGACT
CTGCCGAAATGTTTGACACAGATAACGTGATTGTTTGTCAGTACGATAAG
ATCACCAGGTCGCGAAACAAATGGAAATTCTATCTCAAAGATGGCATCAT
GAACATGCGGGGCAAGGACTACGTGTTCCAGAAATCGAATGGCGACGCCG
AGTGGGCAAGCTTTCTAGACCAT
BO29295.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:51:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TfIIA-L-RB | 1092 | CG5930-PB | 1..1089 | 17..1105 | 5445 | 100 | Plus |
| TfIIA-L-RA | 1101 | CG5930-PA | 1..1098 | 17..1105 | 5320 | 99.2 | Plus |
| TfIIA-L-RC | 975 | CG5930-PC | 1..972 | 134..1105 | 4860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TfIIA-L-RB | 1586 | CG5930-RB | 173..1261 | 17..1105 | 5445 | 100 | Plus |
| TfIIA-L-RC | 1440 | CG5930-RC | 50..1115 | 40..1105 | 5330 | 100 | Plus |
| TfIIA-L-RA | 1595 | CG5930-RA | 173..1270 | 17..1105 | 5320 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27255088..27255395 | 240..547 | 1540 | 100 | Plus |
| 3R | 32079331 | 3R | 27255726..27255970 | 756..1000 | 1225 | 100 | Plus |
| 3R | 32079331 | 3R | 27255456..27255663 | 548..755 | 1040 | 100 | Plus |
| 3R | 32079331 | 3R | 27254527..27254729 | 40..242 | 1015 | 100 | Plus |
| 3R | 32079331 | 3R | 27256032..27256138 | 999..1105 | 535 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 00:51:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 5723..5805 | 792..877 | 116 | 62.8 | Plus |
BO29295.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-26 13:54:54 Download gff for
BO29295.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIA-L-RB | 173..1261 | 17..1107 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:36:10 Download gff for
BO29295.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIA-L-RB | 173..1261 | 17..1107 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:11:30 Download gff for
BO29295.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIA-L-RB | 173..1261 | 17..1107 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:11:30 Download gff for
BO29295.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27255456..27255663 | 548..755 | 100 | -> | Plus |
| 3R | 27253602..27253625 | 17..40 | 100 | -> | Plus |
| 3R | 27254528..27254728 | 41..241 | 100 | -> | Plus |
| 3R | 27255090..27255395 | 242..547 | 100 | -> | Plus |
| 3R | 27255726..27255970 | 756..1000 | 100 | -> | Plus |
| 3R | 27256034..27256138 | 1001..1107 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:36:10 Download gff for
BO29295.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23079324..23079347 | 17..40 | 100 | -> | Plus |
| arm_3R | 23080250..23080450 | 41..241 | 100 | -> | Plus |
| arm_3R | 23080812..23081117 | 242..547 | 100 | -> | Plus |
| arm_3R | 23081178..23081385 | 548..755 | 100 | -> | Plus |
| arm_3R | 23081448..23081692 | 756..1000 | 100 | -> | Plus |
| arm_3R | 23081756..23081860 | 1001..1107 | 98 | | Plus |
BO29295.pep Sequence
Translation from 16 to 1123
> BO29295.pep
MALCQTSVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQVWRNKLLA
SKAVELSPDSGDGSHPPPIVANNPKAANAKAKKAAAATAVTSHQHIGGNS
SMSSLVGLKSSAGMAAGSGIRNGLVPIKQEVNSQNPPPLHPTSAASMMQK
QQQAASSGQGSIPIVATLDPNRIMPVNITLPSPAGSASSESRVLTIQVPA
SALQENQLTQILTAHLISSIMSLPTTLASSVLQQHVNAALSSANHQKTLA
AAKQLDGALDSSDEDESEESDDNIDNDDDDDLDKDDDEDAEHEDAAEEEP
LNSEDDVTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGK
DYVFQKSNGDAEWASFLDH
BO29295.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:00:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TfIIA-L-PB | 363 | CG5930-PB | 1..363 | 1..363 | 1838 | 100 | Plus |
| TfIIA-L-PA | 366 | CG5930-PA | 1..366 | 1..363 | 1824 | 99.2 | Plus |
| TfIIA-L-PC | 324 | CG5930-PC | 1..324 | 40..363 | 1644 | 100 | Plus |
