BO29296.complete Sequence
721 bp assembled on 2011-08-26
GenBank Submission: KX799216
> BO29296.complete
GAAGTTATCAGTCGACATGAAGTTTTACCTGTTGGTGATTGCAGCCCTCT
CGTTTTTGGCCTACATCAGTTGTGGCATGACTCAATCGAAACGCTCCGTT
CCACTCGCTCAATTTGCAGATGGATGCATCCAGTGCAATTCGAAGGACAA
CGAACGCTGCGCCACAGATCCATTGAGCCTGCTCAATCGCAACTGTTCCG
ATGGATCCTCCAACTGCTATTCCCGCGTCCTGGATGGCTACACAATTCGC
GGCTGTGCCGTCGATCTGGACAACGCCACGCGTAATTCGTGCAACAACGA
GCTACTGTGCCAGCTGTGCACCTACAGCGAGGGATGCAATCGAAACACCT
TCCCGTTGAGCCGCCTCATGTGCCTACAGTGCACAGGGAACTCGACCTCG
TCGTCCTGCGCCACAGAGACCTATGTATCGGCCAAGATCTGCCCGCTGTA
CAAGTTCGGCGACAAGTGCTACATTCGCAATAGCAATCGCACCGTGGACG
GATCCTTCCAGCGCGGCTGTCTCACCTCGGCGAATGCCAGGAAGCAGTGC
GTCAAGGATGGCAACTGTTATACGTGCGAGGGACGCGGCTGCAACTTTCT
GCTGGCCAATGATACCAACATTCCGCTGGCACGCGACAGCGGTGCCCAGT
TGATCATCTCCATGACGCTGCTGATCAGCGGTCTTGTCGCCGCCTGGAGA
CTCGCAAGCTTTCTAGACCAT
BO29296.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:51:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15347-RB | 690 | CG15347-PB | 1..687 | 17..703 | 3435 | 100 | Plus |
| CG15347-RA | 645 | CG15347-PA | 58..642 | 119..703 | 2925 | 100 | Plus |
| CG15347-RA | 645 | CG15347-PA | 1..58 | 17..74 | 290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15347-RB | 968 | CG15347-RB | 75..762 | 16..703 | 3440 | 100 | Plus |
| CG15347-RA | 923 | CG15347-RA | 133..717 | 119..703 | 2925 | 100 | Plus |
| CG15347-RA | 923 | CG15347-RA | 75..133 | 16..74 | 295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8458700..8459170 | 703..233 | 2355 | 100 | Minus |
| X | 23542271 | X | 8459224..8459383 | 233..74 | 800 | 100 | Minus |
| X | 23542271 | X | 8460765..8460824 | 75..16 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:51:23 has no hits.
BO29296.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-26 13:54:55 Download gff for
BO29296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15347-RB | 72..758 | 17..705 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:36:22 Download gff for
BO29296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15347-RB | 76..762 | 17..705 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:11:38 Download gff for
BO29296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15347-RB | 76..762 | 17..705 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:11:38 Download gff for
BO29296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8458698..8459169 | 234..705 | 99 | <- | Minus |
| X | 8459224..8459382 | 75..233 | 100 | <- | Minus |
| X | 8460766..8460823 | 17..74 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:36:22 Download gff for
BO29296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8352731..8353202 | 234..705 | 99 | <- | Minus |
| arm_X | 8353257..8353415 | 75..233 | 100 | <- | Minus |
| arm_X | 8354799..8354856 | 17..74 | 100 | | Minus |
BO29296.pep Sequence
Translation from 16 to 721
> BO29296.pep
MKFYLLVIAALSFLAYISCGMTQSKRSVPLAQFADGCIQCNSKDNERCAT
DPLSLLNRNCSDGSSNCYSRVLDGYTIRGCAVDLDNATRNSCNNELLCQL
CTYSEGCNRNTFPLSRLMCLQCTGNSTSSSCATETYVSAKICPLYKFGDK
CYIRNSNRTVDGSFQRGCLTSANARKQCVKDGNCYTCEGRGCNFLLANDT
NIPLARDSGAQLIISMTLLISGLVAAWRLASFLDH
BO29296.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:00:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15347-PB | 229 | CG15347-PB | 1..229 | 1..229 | 1231 | 100 | Plus |
| CG15347-PA | 214 | CG15347-PA | 1..214 | 1..229 | 1132 | 93.4 | Plus |
| CG13492-PD | 2979 | CG13492-PD | 2799..2975 | 37..226 | 204 | 26.9 | Plus |
| CG13492-PD | 2979 | CG13492-PD | 1538..1695 | 37..193 | 184 | 31.7 | Plus |
| CG13492-PD | 2979 | CG13492-PD | 2372..2540 | 27..198 | 180 | 31.5 | Plus |
| CG13492-PD | 2979 | CG13492-PD | 1956..2114 | 27..193 | 177 | 33.1 | Plus |
| CG13492-PD | 2979 | CG13492-PD | 698..849 | 37..193 | 176 | 31.1 | Plus |
| CG13492-PD | 2979 | CG13492-PD | 278..432 | 37..193 | 169 | 33.9 | Plus |
| CG13492-PD | 2979 | CG13492-PD | 2638..2790 | 37..195 | 162 | 29.9 | Plus |
| CG15773-PB | 319 | CG15773-PB | 33..177 | 37..193 | 160 | 29.4 | Plus |
| CG4363-PA | 199 | CG4363-PA | 24..180 | 34..193 | 155 | 25.5 | Plus |
| CG13492-PD | 2979 | CG13492-PD | 1120..1271 | 37..193 | 154 | 26.9 | Plus |
