BO29301.complete Sequence
943 bp assembled on 2011-09-19
GenBank Submission: KX797539
> BO29301.complete
GAAGTTATCAGTCGACATGGAAGAAAGTCAGCCAAGGTATGGCGCTATGT
GGACATTCAAGCTGGTGGCACCATACGTAATTGGCGGCTACCTATGCGGC
CTCGCGGTAACGCTCGCATGGAACTGGTGGCAGCTGGGCCACTTGGTTCT
GGGTCTTAATCTCACCTTCGCGATTCCGGTGGCGCTTGTTCTGGCGGTCT
TTTACAGCAGGCCCGTAAGGTGCATTGTGACTTTGGCCCTTCCCTCGCTG
TGCAGCTCTCGGGGAAGGGCGTTCCTCATCAGCCTTGCCTTTGTTATTGC
CGCAGTTGGGCCTACGGCGAACATTCTAGCCAATTTGAAGGTGATGCTCC
GCAGCCTCGCTTGCGGACAGGAGCTATTGCGTCAGGCGCTTGGCCAGATG
TTGGACGTAATACTGGAGCCGGTGAATGCCATCCAGCTAGCGGTGGATCT
CTTGATGCGGGAAGTGCGTCGGGTGCTCAAGCTGGCCATGGTAGTGCTGT
TACGCATTCAGGACCAATTGATCGCAATTACAAGCATTTTTAAGTTTATC
CGCCGCAGAAAGCGTAATGAGTTTAACCACACACGGAATGTGAAGCACAC
CAGAAACTACACTTGGCTGAACAATAGATTCTCCTGTTTAATGTGCATGT
GCTCCTGCTGCTCATCCTGTCAAAGCACTGAGAGGTGCACCATATGTGGC
CGATCTCTGACTCTTTCAAATCGTAACCCCTGCGACACTCCTGGATGCAA
AGGGGTTTATTGCGGTAAATGCTTTGAAAAGTCACACAATAAGTGTTGTC
TGTGCAATCGACCAGTGGATTATGGTGATTTTTCCGACGTTACTGAAGTA
GACGACTCTTCGGACTATTCTGAAAAAGAGTCTTTTAGCGAAAGGCAGTA
CAGGAAGACCTGTGGAGGACAACGCGCAAGCTTTCTAGACCAT
BO29301.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:44:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6845-RD | 912 | CG6845-PD | 1..909 | 17..925 | 4545 | 100 | Plus |
| CG6845-RC | 2019 | CG6845-PC | 1..514 | 17..530 | 2570 | 100 | Plus |
| CG6845-RC | 2019 | CG6845-PC | 1621..2016 | 530..925 | 1980 | 100 | Plus |
| CG6845-RE | 1005 | CG6845-PE | 607..1002 | 530..925 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:44:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6845-RD | 1069 | CG6845-RD | 71..980 | 16..925 | 4550 | 100 | Plus |
| CG6845-RE | 2294 | CG6845-RE | 71..585 | 16..530 | 2575 | 100 | Plus |
| CG6845-RC | 2176 | CG6845-RC | 71..585 | 16..530 | 2575 | 100 | Plus |
| CG6845-RE | 2294 | CG6845-RE | 1810..2205 | 530..925 | 1980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:44:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 146770..147082 | 218..530 | 1565 | 100 | Plus |
| 3L | 28110227 | 3L | 146503..146708 | 16..221 | 1030 | 100 | Plus |
| 3L | 28110227 | 3L | 148462..148645 | 531..714 | 920 | 100 | Plus |
| 3L | 28110227 | 3L | 148704..148841 | 715..852 | 690 | 100 | Plus |
| 3L | 28110227 | 3L | 148895..148967 | 853..925 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:44:26 has no hits.
BO29301.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:43:17 Download gff for
BO29301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6845-RD | 52..960 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:20:41 Download gff for
BO29301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6845-RD | 72..980 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:37 Download gff for
BO29301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6845-RD | 72..980 | 17..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:37 Download gff for
BO29301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 148462..148645 | 531..714 | 100 | -> | Plus |
| 3L | 148704..148841 | 715..852 | 100 | -> | Plus |
| 3L | 148895..148967 | 853..927 | 97 | | Plus |
| 3L | 146504..146706 | 17..219 | 100 | -> | Plus |
| 3L | 146772..147082 | 220..530 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:20:41 Download gff for
BO29301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 146504..146706 | 17..219 | 100 | -> | Plus |
| arm_3L | 146772..147082 | 220..530 | 100 | -> | Plus |
| arm_3L | 148462..148645 | 531..714 | 100 | -> | Plus |
| arm_3L | 148704..148841 | 715..852 | 100 | -> | Plus |
| arm_3L | 148895..148967 | 853..927 | 97 | | Plus |
BO29301.pep Sequence
Translation from 16 to 943
> BO29301.pep
MEESQPRYGAMWTFKLVAPYVIGGYLCGLAVTLAWNWWQLGHLVLGLNLT
FAIPVALVLAVFYSRPVRCIVTLALPSLCSSRGRAFLISLAFVIAAVGPT
ANILANLKVMLRSLACGQELLRQALGQMLDVILEPVNAIQLAVDLLMREV
RRVLKLAMVVLLRIQDQLIAITSIFKFIRRRKRNEFNHTRNVKHTRNYTW
LNNRFSCLMCMCSCCSSCQSTERCTICGRSLTLSNRNPCDTPGCKGVYCG
KCFEKSHNKCCLCNRPVDYGDFSDVTEVDDSSDYSEKESFSERQYRKTCG
GQRASFLDH
BO29301.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:09:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6845-PD | 303 | CG6845-PD | 1..303 | 1..303 | 1611 | 100 | Plus |
| CG6845-PC | 672 | CG6845-PC | 1..176 | 1..176 | 856 | 97.7 | Plus |
| CG6845-PC | 672 | CG6845-PC | 541..672 | 172..303 | 758 | 100 | Plus |
| CG6845-PE | 334 | CG6845-PE | 203..334 | 172..303 | 758 | 100 | Plus |
| CG32320-PD | 767 | CG32320-PD | 100..259 | 20..176 | 211 | 33.1 | Plus |
| CG32320-PD | 767 | CG32320-PD | 636..751 | 181..288 | 156 | 31.1 | Plus |
