BO29505.complete Sequence
849 bp assembled on 2011-09-15
> BO29505.complete
GAAGTTATCAGTCGACATGTTGTCGAATCAAGATCTCAGTCTGAGTTTAA
TCGTTATCCTGGCCGTAACTACGGTTGGTCAGGCCGCGCCTTCCATATCA
AGGGTGGTCAATGGTACGGACTCCAGTGTGCTGAAATATCCTTTCGTGGT
ATCCCTAAGGAGCTACGATGGCTCGCATTCCTGCGGTGGTTCTATTATTT
CAAAACATTTTGTGATGACCGCTGCTCATTGCACCAATGGTCGACCTGCG
GATACCCTATCAATTCAGTTTGGAGTGACCAATATTAGTGCCATGGGTCC
GAATGTGGTGGGCATAAAGAAGATAATCCAGCACGAAGACTTTGATCCCA
CTCGCCAAAATGCAAATGACATCTCGCTGCTGATGGTGGAGGAACCTTTT
GAGTTCGATGGCGTCTCTGTGGCCCCGGTGGAACTGCCAGCTCTGGCTTT
TGCTGTGCCTCAATCGGATGCTGGAGTCGAAGGAGTGCTCATCGGTTGGG
GTCTCAATGATACTTATGGAAGTGTGCAGGACACCCTACAGGAGGTTTCC
CTGAAGATTTACTCGGATGAAGAGTGCACCAGCCGGCACAATGGCCAAAC
GGATCCCAAATATCACATATGCGGAGGAGTAGACGAAGGAGGAAAGGGAC
AGTGCAGTGGAGATTCGGGCGGACCCCTCATCTACAATGGCCAGCAAGTG
GGCATCGTGTCGTGGAGCATTAAGCCCTGCACCGTGGCTCCCTATCCGGG
TGTCTACTGTAAGGTTAGCCAGTACGTTGACTGGATCAAAAGCAACCAAA
TAATATCGGCTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCAAAACGG
BO29505.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:46:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12951-RA | 798 | CG12951-PA | 1..795 | 17..811 | 3960 | 99.9 | Plus |
| CG16749-RA | 798 | CG16749-PA | 88..773 | 104..789 | 1060 | 77 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:46:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12951-RA | 857 | CG12951-RA | 7..801 | 17..811 | 3960 | 99.9 | Plus |
| CG16749-RA | 873 | CG16749-RA | 94..779 | 104..789 | 1060 | 77 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:46:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9329641..9330004 | 511..148 | 1820 | 100 | Minus |
| 3R | 32079331 | 3R | 9329279..9329578 | 811..512 | 1485 | 99.7 | Minus |
| 3R | 32079331 | 3R | 9330191..9330325 | 151..17 | 675 | 100 | Minus |
| 3R | 32079331 | 3R | 9330979..9331166 | 789..602 | 670 | 90.4 | Minus |
| 3R | 32079331 | 3R | 9331322..9331662 | 509..169 | 445 | 75.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:46:27 has no hits.
BO29505.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-15 17:46:06 Download gff for
BO29505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12951-RA | 6..798 | 22..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:22:26 Download gff for
BO29505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12951-RA | 12..801 | 22..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:41 Download gff for
BO29505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12951-RA | 12..801 | 22..811 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:41 Download gff for
BO29505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9329279..9329578 | 512..811 | 99 | <- | Minus |
| 3R | 9329641..9330003 | 149..511 | 100 | <- | Minus |
| 3R | 9330194..9330320 | 22..148 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:22:26 Download gff for
BO29505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5155001..5155300 | 512..811 | 99 | <- | Minus |
| arm_3R | 5155363..5155725 | 149..511 | 100 | <- | Minus |
| arm_3R | 5155916..5156042 | 22..148 | 100 | | Minus |
BO29505.pep Sequence
Translation from 16 to 847
> BO29505.pep
MLSNQDLSLSLIVILAVTTVGQAAPSISRVVNGTDSSVLKYPFVVSLRSY
DGSHSCGGSIISKHFVMTAAHCTNGRPADTLSIQFGVTNISAMGPNVVGI
KKIIQHEDFDPTRQNANDISLLMVEEPFEFDGVSVAPVELPALAFAVPQS
DAGVEGVLIGWGLNDTYGSVQDTLQEVSLKIYSDEECTSRHNGQTDPKYH
ICGGVDEGGKGQCSGDSGGPLIYNGQQVGIVSWSIKPCTVAPYPGVYCKV
SQYVDWIKSNQIISAASFLDHSFGAQN
BO29505.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:19:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12951-PA | 265 | CG12951-PA | 1..265 | 1..265 | 1387 | 100 | Plus |
| CG16749-PA | 265 | CG16749-PA | 1..265 | 1..265 | 1088 | 75.8 | Plus |
| CG32808-PA | 284 | CG32808-PA | 29..255 | 29..257 | 499 | 44.8 | Plus |
| etaTry-PA | 262 | CG12386-PA | 9..254 | 9..257 | 376 | 35 | Plus |
| lambdaTry-PA | 272 | CG12350-PA | 35..256 | 29..257 | 371 | 36.6 | Plus |
