BO29508.complete Sequence
2425 bp assembled on 2011-10-14
> BO29508.complete
GAAGTTATCAGTCGACATGCTTTTAGGATTCAGCCTTGAGATCGTGCCGC
AGATCACTCATCTAGAAAAACTAGAGCTGAATGTCCGAATGCATTCCAGT
ATCCTGGTCGAGCTGTGTAAACTGAATCCAAACCTACGAAGACTCATTCT
AAGGAATTCCGAAATATTTGGCAGATTATCGGATATAGTACCTCATTGCA
ATCAACTGGAATATCTGAGCTTTGTGATGAAAGAGGTAGATGCATCCGAG
TACGTAGCCCTGGCCAATTTGCCGCAACTTAAGTCATTAATTCTGTGTGG
CGAGCATCTCGAGGGATCGCTTGTGAAGCTTTTTAATCGCTTCCAAGAAC
ACCAGCACATCCAGAGCATATGTATCCCGGAAACATATGTCAGCAATGCA
GAGGCCATCGCCTTGGCATCCATTCGCTTAGTGGTTTCAATTAAGTGCTG
TTTGCGGGATAAATCGATCTATTCGGACTTGCCGTTAAGCGGAAAACTTA
CTCATATCTACATTCTGGGTCACCCCATGCAATATAATCCAGACAATCCG
TATTACAATGAAAAGGAGGAGGATTTTCTCAAAGTGACTTATAGGGCACA
TAGACCGTTAGCCGTCGTGCGTGCATATTATCAATATTGGCAGACCAAAG
ATCCAAATCTATTGCAATTGGCCTTCGATGAAGATTATTTGCATGCACAT
CGTCTCTATTGCATAGGCTGGTATGATGCCAAGATTTTACCAGCTACAAT
GCACAATTCATCAGAACAATTCTCGGTCTCTATCACCGGAATTGTGCTCA
ATAAAAAGGTATCGATTTCCGATGCAGAACTTGCCGTACTGGCTTCCATA
CCCACGCTTACCACCATTCGATGTTCATTTGTTCAAATAGAGCAAATAAT
CGCGGTTAAACTCCAGCAACTTAATGAGATTACAAATACCGCAAATCGAG
TGGATAAAATTAAAACCGAATTTTGCAATATTCGTTTCGTTCATAGCCAC
GAATCTGTGACGCTCGTACTGGAATTCTTTGTACAGTGCATCCTGAGTTA
TGGGAGTATCCTTGCTCCTCTTGCCAATTTAAGAAATTTGAAACGTCTGG
AGATAAAGGGAAAACTTATGAGCGGATCATTGGTGGAGCTCTTTAGGGCT
TTGGCCGCCTTGGATAAACACACACTGCAGCAACTAGAAACTGCATTCCT
TGACCCAGAGGAACTCGAAGAGGTGGTAAAGATACAAAGCTTGAGGATAC
TTAAAAGTGGTTTCTTCTGCTCAAAATATATAAATGAACTTGGCAACTTG
GAGCAATTGGAGGAGCTTACACTTATCGTTCATCCGCAGGGATCTCTGAT
AGAGTTGTTCGCTGTCCTGGAATCCAAGCAGCCTCAAGTACTCAAAAGAC
TCGTTATTCAGAATGCAAAACTTACTAAACAAGAAGTTGGCCACCTTGCT
GGCATAAGATCCTTGGAAAGCCTTCAGCTCGGTCTGCCCGAAGTAAAATA
TTGGGAACAGCAACTAAAAGATACAAAAAATCAGGCATTCGTAAACTATT
GTCAAAAGTGTCTGCTGGCCCCGGTTTCATTCACATATGAGAACCAAACT
CATCAAACTGACATTCATACATTGATAACTGCGACAGATGAAGATCCCTT
GGATGCTCAGTTTAATTTTTTAACGCAATCGTATGGCACATTGACTCCCA
CGAACTTGGCACTCTTGGCCAATTTGCCGAACTTAAAGGAATTAAAAATT
TATTTTAATTACAATACACTAGATGCGGTGAACTTATTGAACACTATAGC
CTTGCAGTATCCTCAAAAGGTAAGAACACTTGCATTTGCATCTCAGGACT
TTAGGTTGGTGTCGCTGTTCAAGGACTTGCAATCCTTCGAATGCGTTTTT
AGCCATATAAAAGATATCGAGTATATATCTCAGCTCAGAAATCTGACAGA
CTTGCAAATCGATAATCCTCTTGGTATATCCCTGTGGCAGCTTCTTAAGG
AACTGAAAGTTTTAGGTAATCTTCAATCCTTAATTCTGGATAATTCGAAT
CTGGAATTTTTAGAGCTTGTTGAAGTAACAAAACTTAGTTGGCTAAAACG
ATTACGACTCGGTTTGGCCAAGAAACAGTTCATCTTTATGCTAATTCAAT
TGGAAGACCTCGAAGTCTTGGAAATTACATCGACCCATTACGCAGCGGAA
AATGAAAGCAACTTCCTCTATTCCTTTCTAATAAAGTGCAAAAATATTAA
ATCAATATCTCTTTATCGGTTCTACGATTTCCTCAGAAAGGATTATATCA
ATGGAATACTAAATCATATTAAGCTGTTTCGAAATCCCTACGAGCACCCG
CCTTTCAAATTGCGTGGAGTTTGGTCAGACTTCAAAAGATTCAATCATGT
AAGATTTGCAAGCTTTCTAGACCAT
BO29508.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:52:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32107-RE | 2871 | CG32107-PE | 487..2868 | 26..2407 | 11910 | 100 | Plus |
| CG32107-RD | 2943 | CG32107-PD | 487..2859 | 26..2398 | 11865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:52:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32107-RE | 3956 | CG32107-RE | 508..2889 | 26..2407 | 11910 | 100 | Plus |
| CG32107-RD | 3892 | CG32107-RD | 508..2880 | 26..2398 | 11865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:52:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12858349..12860739 | 2407..17 | 11955 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:52:11 has no hits.
BO29508.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:57:30 Download gff for
BO29508.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32107-RA | 1..2391 | 17..2409 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:39:21 Download gff for
BO29508.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32107-RB | 511..2892 | 26..2409 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:44:36 Download gff for
BO29508.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32107-RE | 508..2889 | 26..2409 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:44:36 Download gff for
BO29508.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12858347..12860739 | 17..2409 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:39:21 Download gff for
BO29508.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12851447..12853839 | 17..2409 | 99 | | Minus |
BO29508.pep Sequence
Translation from 16 to 2425
> BO29508.pep
MLLGFSLEIVPQITHLEKLELNVRMHSSILVELCKLNPNLRRLILRNSEI
FGRLSDIVPHCNQLEYLSFVMKEVDASEYVALANLPQLKSLILCGEHLEG
SLVKLFNRFQEHQHIQSICIPETYVSNAEAIALASIRLVVSIKCCLRDKS
IYSDLPLSGKLTHIYILGHPMQYNPDNPYYNEKEEDFLKVTYRAHRPLAV
VRAYYQYWQTKDPNLLQLAFDEDYLHAHRLYCIGWYDAKILPATMHNSSE
QFSVSITGIVLNKKVSISDAELAVLASIPTLTTIRCSFVQIEQIIAVKLQ
QLNEITNTANRVDKIKTEFCNIRFVHSHESVTLVLEFFVQCILSYGSILA
PLANLRNLKRLEIKGKLMSGSLVELFRALAALDKHTLQQLETAFLDPEEL
EEVVKIQSLRILKSGFFCSKYINELGNLEQLEELTLIVHPQGSLIELFAV
LESKQPQVLKRLVIQNAKLTKQEVGHLAGIRSLESLQLGLPEVKYWEQQL
KDTKNQAFVNYCQKCLLAPVSFTYENQTHQTDIHTLITATDEDPLDAQFN
FLTQSYGTLTPTNLALLANLPNLKELKIYFNYNTLDAVNLLNTIALQYPQ
KVRTLAFASQDFRLVSLFKDLQSFECVFSHIKDIEYISQLRNLTDLQIDN
PLGISLWQLLKELKVLGNLQSLILDNSNLEFLELVEVTKLSWLKRLRLGL
AKKQFIFMLIQLEDLEVLEITSTHYAAENESNFLYSFLIKCKNIKSISLY
RFYDFLRKDYINGILNHIKLFRNPYEHPPFKLRGVWSDFKRFNHVRFASF
LDH
BO29508.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:33:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32107-PE | 956 | CG32107-PE | 163..956 | 4..797 | 4065 | 100 | Plus |
| CG32107-PD | 980 | CG32107-PD | 163..954 | 4..795 | 4051 | 99.9 | Plus |
