BO29906.complete Sequence
901 bp assembled on 2012-04-24
GenBank Submission: KX798800
> BO29906.complete
GAAGTTATCAGTCGACATGCAGACCGGAGTACAACTAGCTTTGTTTTTGA
CCCTCACAATAGCAGCGGTCTACGGAGAGACTGGATTTTTCCTGAACACA
CGTCGCGTCCAGGAAAATGCACAGCCAATCGAGGCGGAAGTGGAGGCTCT
GGTAAGGAGCTCCTTCTATGCCGCAGATCCAACAGTCGTAACTATTCCCC
GCTGGCTTGGCAATATCTCCTCGCCGGAAATCCCCGCGGTGGTTTCTGCC
CGACTTCAGCAGCAGGACAGCAATATAATCAGTGTTGATCTATCTGAAGC
CAATGATGAAACAGAGATCATCGACAGCGTGGCCAGTTTGGTGATCGTTC
TACACAATCAATTCGATATGCCACTGGATCGCATTCTGGTCGTGGGCTTC
GCGGAGGGCGCCCATTTGGCAGGTGGGGTGGCTGCCAAGGTGCAGCAGGA
CCTGGGTCGCCAGTTGTCGCAGATTACAGCTCTTGATCCTTCCTCTGGCG
CGGAACTAGACCACAAGCTGTCCCAAGCCGATGCTGAGTTTGTGGAGGTT
GTGCACACAAATGCCGGAGGAGAGGGCACTTGGGAGCGACTGGGTCATGT
GGACTACTATCCCAACGGAGGACAAACGCAGCCTGGCTGCACCACGGACT
CCTGTTCGCACGAGAGAGCCTTCGAGCTGCTCGCCGAGATGTGGTCGCCG
GAGAATGACTTTGTGAGCGCCCGTTGTGGTTCGGTGGAGACTTTAAGTGC
CTCCAGCTGCCGCTGGTCCACACACAAAATGGGCCAAAAACAGGAGGAGG
AGCAGCCTGCCTCAGGCATCTATTTCCTGGAGACCCGACAGTCCTCACCC
TTCTCCCGTGGAGCATACTTCATAAGCTTCCTGGCAAGCTTTCTAGACCA
T
BO29906.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:51:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10116-RA | 870 | CG10116-PA | 1..867 | 17..883 | 4335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:51:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10116-RA | 918 | CG10116-RA | 1..867 | 17..883 | 4335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:51:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13456259..13456955 | 883..187 | 3485 | 100 | Minus |
| 3L | 28110227 | 3L | 13457010..13457128 | 186..68 | 595 | 100 | Minus |
| 3L | 28110227 | 3L | 13457187..13457238 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:51:50 has no hits.
BO29906.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:01:02 Download gff for
BO29906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10116-RA | 1..867 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:25 Download gff for
BO29906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10116-RA | 1..867 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:59:14 Download gff for
BO29906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10116-RA | 1..867 | 17..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:59:14 Download gff for
BO29906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13457187..13457238 | 17..68 | 100 | | Minus |
| 3L | 13456257..13456955 | 187..885 | 99 | <- | Minus |
| 3L | 13457010..13457127 | 69..186 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:25 Download gff for
BO29906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13450110..13450227 | 69..186 | 100 | <- | Minus |
| arm_3L | 13450287..13450338 | 17..68 | 100 | | Minus |
| arm_3L | 13449357..13450055 | 187..885 | 99 | <- | Minus |
BO29906.pep Sequence
Translation from 16 to 901
> BO29906.pep
MQTGVQLALFLTLTIAAVYGETGFFLNTRRVQENAQPIEAEVEALVRSSF
YAADPTVVTIPRWLGNISSPEIPAVVSARLQQQDSNIISVDLSEANDETE
IIDSVASLVIVLHNQFDMPLDRILVVGFAEGAHLAGGVAAKVQQDLGRQL
SQITALDPSSGAELDHKLSQADAEFVEVVHTNAGGEGTWERLGHVDYYPN
GGQTQPGCTTDSCSHERAFELLAEMWSPENDFVSARCGSVETLSASSCRW
STHKMGQKQEEEQPASGIYFLETRQSSPFSRGAYFISFLASFLDH
BO29906.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:14:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10116-PA | 289 | CG10116-PA | 1..289 | 1..289 | 1481 | 100 | Plus |
| CG6295-PA | 338 | CG6295-PA | 66..337 | 24..282 | 276 | 30.7 | Plus |
| CG6296-PA | 676 | CG6296-PA | 73..344 | 24..282 | 271 | 30.8 | Plus |
| CG18641-PC | 369 | CG18641-PC | 72..353 | 24..282 | 263 | 30.3 | Plus |
| CG4582-PA | 432 | CG4582-PA | 140..413 | 32..279 | 262 | 29.6 | Plus |
