Clone BO29908 Report

Search the DGRC for BO29908

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:299
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG3214-RA
Protein status:BO29908.pep: Imported from assembly
Sequenced Size:460

Clone Sequence Records

BO29908.complete Sequence

460 bp assembled on 2012-04-24

GenBank Submission: KX796828

> BO29908.complete
GAAGTTATCAGTCGACATGGCAAAGTTTTTGGGCATCAACCGGCTGACAA
AGCTGTTCCAGATGGTCCGCGAAGCCGGAGGACTGAAGCAAGCGTACCTG
AAGCTCTATAGGAACGATGATCTGAAGATCGGAACCCTGGTGGGCATCGA
CAAGTACGGCAACAAGTACTTCGAGAACCCGTACTACTTCTACGGCCGCA
ATCGCTGGATCGAGTTCGCCCCCCACGTCAACATGGACTACGATGGATCC
ATGATTCCCGCCGAGTGGTACGGCTGGATGCACTACAAGACCGATCTGCC
TCCCATTCGCGATGGATGCCGCCCCAAGTACAAGTGGATAGCGGACCACA
GCGAGAATCTTTCCGGAACTAAGGAGGCCTACTACCCCTACTCCACAACA
CCCAACAAAGTGGAGGCCTGGGAACCCAAGGCGAAGAAGCAGGCAAGCTT
TCTAGACCAT

BO29908.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:50:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3214-RB 429 CG3214-PB 1..426 17..442 2130 100 Plus
CG3214-RA 429 CG3214-PA 1..426 17..442 2130 100 Plus
CG3214-RC 429 CG3214-PC 1..426 17..442 2130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:50:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3214-RB 618 CG3214-RB 33..460 15..442 2140 100 Plus
CG3214-RA 621 CG3214-RA 93..519 16..442 2135 100 Plus
CG3214-RC 677 CG3214-RC 149..575 16..442 2135 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2579619..2579798 289..110 900 100 Minus
2L 23513712 2L 2579859..2579955 112..16 485 100 Minus
2L 23513712 2L 2579483..2579569 374..288 435 100 Minus
2L 23513712 2L 2579359..2579427 442..374 345 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:50:54 has no hits.

BO29908.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:00:58 Download gff for BO29908.complete
Subject Subject Range Query Range Percent Splice Strand
CG3214-RB 44..469 17..444 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:13 Download gff for BO29908.complete
Subject Subject Range Query Range Percent Splice Strand
CG3214-RB 35..460 17..444 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:58:53 Download gff for BO29908.complete
Subject Subject Range Query Range Percent Splice Strand
CG3214-RB 35..460 17..444 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:58:53 Download gff for BO29908.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2579357..2579426 375..444 97 <- Minus
2L 2579483..2579567 290..374 100 <- Minus
2L 2579619..2579796 112..289 100 <- Minus
2L 2579860..2579954 17..111 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:13 Download gff for BO29908.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2579357..2579426 375..444 97 <- Minus
arm_2L 2579483..2579567 290..374 100 <- Minus
arm_2L 2579619..2579796 112..289 100 <- Minus
arm_2L 2579860..2579954 17..111 100   Minus

BO29908.pep Sequence

Translation from 16 to 460

> BO29908.pep
MAKFLGINRLTKLFQMVREAGGLKQAYLKLYRNDDLKIGTLVGIDKYGNK
YFENPYYFYGRNRWIEFAPHVNMDYDGSMIPAEWYGWMHYKTDLPPIRDG
CRPKYKWIADHSENLSGTKEAYYPYSTTPNKVEAWEPKAKKQASFLDH

BO29908.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3214-PB 142 CG3214-PB 1..142 1..142 797 100 Plus
CG3214-PA 142 CG3214-PA 1..142 1..142 797 100 Plus
CG3214-PC 142 CG3214-PC 1..142 1..142 797 100 Plus