BO29912.complete Sequence
1375 bp assembled on 2011-10-18
GenBank Submission: KX795800
> BO29912.complete
GAAGTTATCAGTCGACATGATGATTTCGTGTAAAAAATTATTCGTGTTCC
GGCAGCTGCCGGCGGTGCGCCGTTGCCTAGCGGCAGCCGCGTTCTCCACG
CCACGCGCGACCTCCTACCGAATCCTCTCCAGCGCCGGGAGCGGAAGTAC
CCGGGCAGACGCACCCCAAGTGCGCCGCCTGCACACCACGCGCGACCTCC
TGGCCAAGGACTACTACGCCACGCTGGGCGTTGCCAAGAACGCCAACGGC
AAGGACATCAAGAAAGCCTACTACCAGCTGGCCAAGAAGTACCATCCGGA
CACGAACAAGGAGGATCCGGATGCGGGCCGCAAGTTCCAGGAGGTCTCCG
AGGCCTACGAAGTGCTCAGCGACGAGCAGAAGCGCCGTGAGTACGACACC
TATGGCCAGACGGCGGAAAACATTGGTCGCCAGGGCGGCGGATTCCCTGG
CGGAGGAGCCGGTGGCTTTGGCCCCGAGGGTTTCTCGCAGAGCTGGCAGT
TCCGCTCGAGCATCGACCCCGAGGAGCTCTTCCGCAAGATCTTCGGCGAG
GGCAACTTTCGAACTAACTCGTTCGACGACTTCGCCGACTCCAAGTTCGG
ATTCGGCCAGGCCCAGGAGATGGTCATGGACCTGACCTTTGCCCAGGCGG
CGCGCGGCGTTAACAAGGATGTCAACGTCAACGTGGTGGACCAGTGCCCC
AAGTGCGCCGGCACCAAGTGCGAGCCGGGCACCAAGCCAGGTCGCTGTCA
GTACTGCAACGGCACCGGCTTCGAAACGGTGTCCACTGGGCCCTTCGTAA
TGCGCTCCACTTGCCGCTACTGCCAGGGCACGCGGCAGCACATTAAGTAT
CCGTGCAGCGAGTGCGAGGGCAAGGGCCGCACGGTCCAGCGCCGCAAGGT
CACCGTGCCGGTGCCGGCTGGCATTGAGAACGGGCAAACGGTGCGAATGC
AGGTGGGCAGCAAGGAGCTGTTCGTCACGTTCCGCGTGGAGCGGAGCGAC
TACTTCCGGCGCGAGGGCGCCGATGTGCACACGGACGCGGCCATATCCCT
GGCCCAGGCGGTGCTGGGCGGCACTGTGCGTGTCCAGGGCGTATACGAGG
ATCAGTGGATCAACGTGGAGCCGGGCACCTCGTCGCACCACAAGATCATG
CTGCGCGGCAAGGGTCTGAAACGCGTGAATGCCCACGGACACGGCGATCA
TTACGTGCACGTCAAGATCACGGTGCCATCGGCAAAGAAGCTGGACAAGA
AGCGACTGGCTCTGATCGAGGCGTACGCCGAGCTGGAGGAGGACACCCCC
GGGCAGATCCACGGAATCGCGAATCGCAAAGACGGCAGTAAGCAAGCAAC
GAGCGAGGCAAGCTTTCTAGACCAT
BO29912.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:13:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)tid-RA | 1344 | CG5504-PA | 1..1341 | 17..1357 | 6690 | 99.9 | Plus |
| l(2)tid-RE | 1338 | CG5504-PE | 1..1335 | 17..1351 | 6660 | 99.9 | Plus |
| l(2)tid-RB | 1563 | CG5504-PB | 1..1334 | 17..1350 | 6655 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:13:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)tid-RA | 1799 | CG5504-RA | 74..1414 | 17..1357 | 6690 | 99.9 | Plus |
| l(2)tid-RE | 1505 | CG5504-RE | 74..1408 | 17..1351 | 6660 | 99.9 | Plus |
| l(2)tid-RB | 1804 | CG5504-RB | 74..1407 | 17..1350 | 6655 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:13:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23707154..23708488 | 17..1351 | 6660 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:13:02 has no hits.
BO29912.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-18 10:25:13 Download gff for
BO29912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)tid-RA | 293..1633 | 17..1359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:50:43 Download gff for
BO29912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)tid-RA | 74..1414 | 17..1359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:54:33 Download gff for
BO29912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)tid-RA | 74..1414 | 17..1359 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:54:33 Download gff for
BO29912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23707154..23708488 | 17..1351 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:50:43 Download gff for
BO29912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19594677..19596011 | 17..1351 | 99 | | Plus |
BO29912.pep Sequence
Translation from 16 to 1375
> BO29912.pep
MMISCKKLFVFRQLPAVRRCLAAAAFSTPRATSYRILSSAGSGSTRADAP
QVRRLHTTRDLLAKDYYATLGVAKNANGKDIKKAYYQLAKKYHPDTNKED
PDAGRKFQEVSEAYEVLSDEQKRREYDTYGQTAENIGRQGGGFPGGGAGG
FGPEGFSQSWQFRSSIDPEELFRKIFGEGNFRTNSFDDFADSKFGFGQAQ
EMVMDLTFAQAARGVNKDVNVNVVDQCPKCAGTKCEPGTKPGRCQYCNGT
GFETVSTGPFVMRSTCRYCQGTRQHIKYPCSECEGKGRTVQRRKVTVPVP
AGIENGQTVRMQVGSKELFVTFRVERSDYFRREGADVHTDAAISLAQAVL
GGTVRVQGVYEDQWINVEPGTSSHHKIMLRGKGLKRVNAHGHGDHYVHVK
ITVPSAKKLDKKRLALIEAYAELEEDTPGQIHGIANRKDGSKQATSEASF
LDH
BO29912.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:35:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)tid-PA | 447 | CG5504-PA | 1..447 | 1..447 | 2365 | 100 | Plus |
| l(2)tid-PB | 520 | CG5504-PB | 1..449 | 1..449 | 2363 | 99.6 | Plus |
| l(2)tid-PE | 445 | CG5504-PE | 1..445 | 1..445 | 2356 | 100 | Plus |
| l(2)tid-PC | 507 | CG5504-PC | 1..443 | 1..443 | 2337 | 99.3 | Plus |
| l(2)tid-PD | 514 | CG5504-PD | 1..440 | 1..440 | 2333 | 100 | Plus |
